Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003408`

染色体: Chr02 坐标: 55256670-55259103 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003408`
名称	SmilChr02G003408
描述	uncharacterized SmilChr02G003408
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55256670 - 55259103 / `-`

ID 对照

NCBI Gene ID	`LOC131010353`
GeneID	`131010353`
locus_tag	`-`
NCBI Name	`LOC131010353`
原始查询	`LOC131010353`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816067]; symbol=AT2G15730; hit=AT2G15730; species=arabidopsis; confidence=high
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816067]; symbol=AT2G15730; hit=AT2G15730; species=arabidopsis; confidence=high
Arabidopsis	`AT2G15730` (AT2G15730) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816067] identity=61.1; qcov=1; evalue=1.43e-125; confidence=high
Rice	`Os01g0784600` - identity=53.6; qcov=0.979; evalue=4.52e-108; confidence=high
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131010353

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057793827.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057793826.1`
3	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057793826.1`
4	Nucleus	细胞核	0.00000	`XP_057793826.1`
5	Chromosome	染色体	0.00000	`XP_057793826.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55257123`	`T`	`TTG`	2bp_insertion	frameshift_variant	3	B64,C49,D4
`Chr2:55257123`	`T`	`TTG`	2bp_insertion	CDS_variant	3	B64,C49,D4
`Chr2:55257226`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B47
`Chr2:55257226`	`GC`	`G`	1bp_deletion	CDS_variant	1	B47
`Chr2:55257463`	`T`	`TAA`	2bp_insertion	frameshift_variant	6	A1,A13,B117,C27,C3,C53
`Chr2:55257504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr2:55257749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr2:55257800`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B54,B93,C2,C35
`Chr2:55257904`	`C`	`T`	EMS_canonical_SNV	stop_gained	21	A13,A16,A25,A5,A8,B136,B138,B19,B45,B49,B5,B53,B88,C26,C35,C36,C43,C46,C53,C70,C78
`Chr2:55258114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,B139
`Chr2:55258147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,B41

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937843.1
ATACAATATTAGCCATAGAATTGATAAAATAAACGCACCAAATCGTGCCCTAGATCTCACTATATATTTAAATTAAATTTGGTCCTATATATGAATAAAAGTTGGTTTAAATTTTAATTTATTCATCAATAATATTATCAATTTTCATAATACATTACAAAAAGACCAATGATCAAGTAAACTTTCTGAATTCAATAAGTAAAATCAATTCATTTGTATAATAATATTTATATTTTTTACTTTTATCAAATAAAATAACA...

XM_057937844.1
TCTAAATACAATATTAGCCATAGAATTGATAAAATAAACGCACCAAATCGTGCCCTAGATCTCACTATATATTTAAATTAAATTTGGTCCTATATATGAATAAAAGTTGGTTTAAATTTTAATTTATTCATCAATAATATTATCAATTTTCATAATACATTACAAAAAGACCAATGATCAAGTAAACTTTCTGAATTCAATAAGTAAAATCAATTCATTTGTATAATAATATTTATATTTTTTACTTTTATCAAATAAAA...

CDS

2 records

下载 CDS FASTA

LOC131010353
ATGGAGAATTCAAGATTGAAAACTCAGATGCAGGAGGTGTGGGTGACAAAATCGCCTAAAAGGTCTCCACTGATATTAAGTATGGTGGTCTTAATCTTGGCCACCATTTCTGCATTGTACATCTTCTCAATCCGCATCAGTATTCTGGGACAAGTCACAATGCTAAAGATTATTGATCATCGATGTGGAATCCAAGCACCTTATTTACATTTTCCTGATCCTGAAACATTTGAAAGACAGGAATGTGCGTGCAATCCGGT...

Protein

2 records

下载 Protein FASTA

XP_057793826.1
MENSRLKTQMQEVWVTKSPKRSPLILSMVVLILATISALYIFSIRISILGQVTMLKIIDHRCGIQAPYLHFPDPETFERQECACNPVLYFAIVSMQRSGSGWFETLLNSHVNLSSNGEIFGARDRRNNASVIYKILDQVYNLDWFSSASKNECTAVVGFKWMLNQGLMEYHEEIADYFIKRGVSIIFLFRRNLLRRMISLLANSYDKDAKLLNGTHKSHVHSPHEAQILARYKPSLNVTTLLSNLKSAERMVAKALECFK...

XP_057793827.1
MENSRLKTQMQEVWVTKSPKRSPLILSMVVLILATISALYIFSIRISILGQVTMLKIIDHRCGIQAPYLHFPDPETFERQECACNPVLYFAIVSMQRSGSGWFETLLNSHVNLSSNGEIFGARDRRNNASVIYKILDQVYNLDWFSSASKNECTAVVGFKWMLNQGLMEYHEEIADYFIKRGVSIIFLFRRNLLRRMISLLANSYDKDAKLLNGTHKSHVHSPHEAQILARYKPSLNVTTLLSNLKSAERMVAKALECFK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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