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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003432

染色体: Chr02 坐标: 55551040-55555242 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003432
名称SmilChr02G003432
描述putative pentatricopeptide repeat-containing protein At1g19290
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向55551040 - 55555242 / +

ID 对照

NCBI Gene IDLOC131010407
GeneID131010407
locus_tag-
NCBI NameLOC131010407
原始查询LOC131010407

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g19290
产物putative pentatricopeptide repeat-containing protein At1g19290
ArabidopsisAT1G19290 (AT1G19290)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838511]
identity=49.6; qcov=0.939; evalue=0; confidence=high
RiceOs05g0275100 (OsPPR920)
-
identity=44.2; qcov=0.986; evalue=0; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131010407

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057793892.1
2 Nucleus 细胞核 0.00000 XP_057793892.1
3 Chromosome 染色体 0.00000 XP_057793892.1
4 Centromere 着丝粒 0.00000 XP_057793892.1
5 Chromatin 染色质 0.00000 XP_057793892.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:55551519 G A EMS_canonical_SNV CDS_variant 1 B84
Chr2:55551703 G A EMS_canonical_SNV CDS_variant 1 C79
Chr2:55551727 G A EMS_canonical_SNV CDS_variant 3 B102,B16,C50
Chr2:55551785 G A EMS_canonical_SNV CDS_variant 2 B69,D7
Chr2:55551793 G A EMS_canonical_SNV CDS_variant 1 B14
Chr2:55551969 C T EMS_canonical_SNV CDS_variant 2 B69,D7
Chr2:55552042 G A EMS_canonical_SNV CDS_variant 5 A21,B64,B69,C79,D7
Chr2:55552091 G A EMS_canonical_SNV CDS_variant 2 A21,B64
Chr2:55552507 G A EMS_canonical_SNV CDS_variant 1 B84
Chr2:55552529 G A EMS_canonical_SNV CDS_variant 1 A14
Chr2:55552543 C T EMS_canonical_SNV CDS_variant 1 D7
Chr2:55552548 C T EMS_canonical_SNV CDS_variant 5 B139,B4,B97,C4,C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793892.1
874 aa
N
1
437
874
PPR_2
PPR
PPR
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF13041 PPR_2 152-200 aa PF01535 PPR 155-184 aa PF01535 PPR 190-211 aa PF13812 PPR_3 214-267 aa PF13041 PPR_2 222-270 aa PF01535 PPR 224-254 aa PF13812 PPR_3 251-286 aa PF12854 PPR_1 253-285 aa PF01535 PPR 259-286 aa PF12854 PPR_1 294-322 aa PF01535 PPR 298-327 aa PF13812 PPR_3 317-378 aa PF12854 PPR_1 326-357 aa PF13041 PPR_2 330-378 aa PF01535 PPR 333-361 aa PF13812 PPR_3 354-409 aa PF12854 PPR_1 361-393 aa PF01535 PPR 367-397 aa PF13041 PPR_2 368-413 aa PF12854 PPR_1 396-427 aa PF01535 PPR 402-432 aa PF13041 PPR_2 402-447 aa PF12854 PPR_1 430-459 aa PF01535 PPR 439-466 aa PF13041 PPR_2 470-518 aa PF01535 PPR 474-502 aa PF23276 TPR_24 492-600 aa PF13812 PPR_3 493-548 aa PF12854 PPR_1 500-532 aa PF01535 PPR 511-537 aa PF13812 PPR_3 527-584 aa PF01535 PPR 543-566 aa PF13041 PPR_2 543-588 aa PF13812 PPR_3 564-619 aa PF12854 PPR_1 572-602 aa PF13041 PPR_2 574-621 aa PF01535 PPR 577-607 aa PF01535 PPR 613-640 aa PF12854 PPR_1 676-703 aa PF13041 PPR_2 679-724 aa PF01535 PPR 683-712 aa PF17177 PPR_long 684-797 aa PF13812 PPR_3 702-759 aa PF12854 PPR_1 710-742 aa PF01535 PPR 717-747 aa PF13812 PPR_3 738-798 aa PF12854 PPR_1 745-776 aa PF13041 PPR_2 749-798 aa PF01535 PPR 752-781 aa PF13812 PPR_3 772-829 aa PF12854 PPR_1 780-812 aa PF13041 PPR_2 784-831 aa PF01535 PPR 787-817 aa PF01535 PPR 823-852 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 152 200 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF01535 PPR Repeat 155 184 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF01535 PPR Repeat 190 211 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13812 PPR_3 Repeat 214 267 3.3e-83 274.5 Pentatricopeptide repeat domain
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 222 270 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF01535 PPR Repeat 224 254 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13812 PPR_3 Repeat 251 286 3.3e-83 274.5 Pentatricopeptide repeat domain
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 253 285 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF01535 PPR Repeat 259 286 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 294 322 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF01535 PPR Repeat 298 327 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13812 PPR_3 Repeat 317 378 3.3e-83 274.5 Pentatricopeptide repeat domain
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 326 357 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 330 378 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF01535 PPR Repeat 333 361 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13812 PPR_3 Repeat 354 409 3.3e-83 274.5 Pentatricopeptide repeat domain
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 361 393 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF01535 PPR Repeat 367 397 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 368 413 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 396 427 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF01535 PPR Repeat 402 432 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 402 447 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 430 459 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF01535 PPR Repeat 439 466 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 470 518 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF01535 PPR Repeat 474 502 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF23276 TPR_24 Repeat 492 600 3e-41 141.1 Pentatricopeptide repeat-containing protein
XP_057793892.1 Pfam PF13812 PPR_3 Repeat 493 548 3.3e-83 274.5 Pentatricopeptide repeat domain
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 500 532 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF01535 PPR Repeat 511 537 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13812 PPR_3 Repeat 527 584 3.3e-83 274.5 Pentatricopeptide repeat domain
XP_057793892.1 Pfam PF01535 PPR Repeat 543 566 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 543 588 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF13812 PPR_3 Repeat 564 619 3.3e-83 274.5 Pentatricopeptide repeat domain
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 572 602 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 574 621 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF01535 PPR Repeat 577 607 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF01535 PPR Repeat 613 640 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 676 703 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 679 724 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF01535 PPR Repeat 683 712 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF17177 PPR_long Repeat 684 797 7.8e-42 143.8 Pentacotripeptide-repeat region of PRORP
XP_057793892.1 Pfam PF13812 PPR_3 Repeat 702 759 3.3e-83 274.5 Pentatricopeptide repeat domain
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 710 742 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF01535 PPR Repeat 717 747 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13812 PPR_3 Repeat 738 798 3.3e-83 274.5 Pentatricopeptide repeat domain
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 745 776 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 749 798 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF01535 PPR Repeat 752 781 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF13812 PPR_3 Repeat 772 829 3.3e-83 274.5 Pentatricopeptide repeat domain
XP_057793892.1 Pfam PF12854 PPR_1 Repeat 780 812 2.3e-152 495.0 PPR repeat
XP_057793892.1 Pfam PF13041 PPR_2 Repeat 784 831 1.2e-157 512.7 PPR repeat family
XP_057793892.1 Pfam PF01535 PPR Repeat 787 817 1.3e-125 401.9 PPR repeat
XP_057793892.1 Pfam PF01535 PPR Repeat 823 852 1.3e-125 401.9 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057937909.1
AGAGGAAAATAAAAATTAAACATGTCTTTTGGGGGCTCATGGTTGGCTCAAGGATTAGAACCGACTATAGTAATAAATAGGATTTTACAATTTTTTTTTGACTTTGGGGAGTTGGGGAGGGGAGCAGTTGGGTTTGAATTCGAGACCTCACTGCATACAGGAGGTCGCACCGCTTGGTGTCCTCTTGAGGACATGATTTTACAATTTTAATTCCATATTACAGTATTTTTAAAATTATACCTGTAGATAACAATTTTAAT...

CDS

1 records

下载 CDS FASTA
LOC131010407
ATGGTAAATCTTGCCTCCCAAATCAGCCGCCTCTTAATCCTCCGTCGTCACGACGCCCTCAGAAGCCTCTCTTTCACTTTCTCCGACCACCTCGTGGACGCAGTGCTAAAAAATCTCAAGCTTCATCCAGTGGCCGCGCTTCACTTCTTTCATCTAGCCTCCAAAGAGAATCACTTCAGACCTCATTTCAAATCCTACGTCAAGATCGTCCATATTTTGTCAAATGCCCGAATGTTTGATGAAACGCGGTTGTATTTACG...

Protein

1 records

下载 Protein FASTA
XP_057793892.1
MVNLASQISRLLILRRHDALRSLSFTFSDHLVDAVLKNLKLHPVAALHFFHLASKENHFRPHFKSYVKIVHILSNARMFDETRLYLRGLVELAERDHLPVSLIYDELVAVFREFRFSGTVFDMMMKTYVERRLVKNALYMFDNLPKCGRVPSLRSCNGLLSCLVKDKDFHAVSCVYDQMIRVGVAPDVYTCAIMVDAHCKDGRLAKALEFVVGVESMGLKMNVVVYNSLINGYVEKRDMQGVEKVLELIRQQGISKNLIT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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