Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003450`

染色体: Chr02 坐标: 55742821-55752322 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003450`
名称	SmilChr02G003450
描述	uncharacterized SmilChr02G003450
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55742821 - 55752322 / `-`

ID 对照

NCBI Gene ID	`LOC131010425`
GeneID	`131010425`
locus_tag	`-`
NCBI Name	`LOC131010425`
原始查询	`LOC131010425`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Spc97 / Spc98 family of spindle pole body (SBP) component [Source:NCBI gene (formerly Entrezgene);Acc:844366]; symbol=emb1427; hit=AT1G80260; species=arabidopsis; confidence=high
产物	Spc97 / Spc98 family of spindle pole body (SBP) component [Source:NCBI gene (formerly Entrezgene);Acc:844366]; symbol=emb1427; hit=AT1G80260; species=arabidopsis; confidence=high
Arabidopsis	`AT1G80260` (emb1427) Spc97 / Spc98 family of spindle pole body (SBP) component [Source:NCBI gene (formerly Entrezgene);Acc:844366] identity=54; qcov=0.965; evalue=0; confidence=high
Rice	`Os02g0523300` - identity=46.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0000278 (mitotic cell cycle); GO:0000922 (spindle pole); GO:0000923 (equatorial microtubule organizing center); GO:0000930 (gamma-tubulin complex); GO:0005813 (centrosome); GO:0007020 (microtubule nucleation); GO:0031122 (cytoplasmic microtubule organization); GO:0043015 (gamma-tubulin binding); GO:0051011 (microtubule minus-end binding); GO:0051225 (spindle assembly); GO:0051321 (meiotic cell cycle)
KEGG	-
Pfam	PF04130 (GCP_C_terminal); PF17681 (GCP_N_terminal); PF20685 (GCP5-Mod21_C)
InterPro	-
eggNOG	-
NR	GeneID:131010425

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057793922.1`
2	Golgi apparatus	高尔基体	0.60000	`XP_057793922.1`
3	Phragmoplast	Phragmoplast	0.40000	`XP_057793922.1`
4	Cytosol	细胞质基质	0.40000	`XP_057793922.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057793922.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55743113`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr2:55743224`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:55748234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr2:55750314`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr2:55750345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr2:55751247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,C19
`Chr2:55751429`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B10,B36,C36,D11
`Chr2:55751469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr2:55751630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793922.1

1013 aa

506

1013

GCP5-Mod21_C

GCP_N_terminal

GCP_C_terminal

PF20685 GCP5-Mod21_C 38-97 aa PF17681 GCP_N_terminal 42-280 aa PF04130 GCP_C_terminal 641-955 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793922.1`	Pfam	`PF20685`	GCP5-Mod21_C	Domain	38	97	1.7e-07	32.1	Gamma-Tubulin ring complex non-core subunit mod21, C-terminal
`XP_057793922.1`	Pfam	`PF17681`	GCP_N_terminal	Domain	42	280	6.1e-23	82.5	Gamma tubulin complex component N-terminal
`XP_057793922.1`	Pfam	`PF04130`	GCP_C_terminal	Domain	641	955	3.9e-65	221.1	Gamma tubulin complex component C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937939.1
ATAGTATAGATTTATTTCTAAATTTCAGAGTAATTTTAAGGACTGCGCCACCACTAGAGCTCGCATCCCCCGCCGCCGACCACCACAACTGCTGCCGTTCCCCAACCATTATCTCCGGCACCACCAACTAAATAGTAAAATTCAACCAACGATACTGTAGATCTACCCAGAGAGAGCGAGAGGCTGAGTGTTTTTCAATTCCAAGCTTTCTTCACGAAAACAAAATTCCCATACTTCTATCCCCTTAAACTCTTTCTCAC...

CDS

1 records

下载 CDS FASTA

LOC131010425
ATGGTTCGCGCAGAGATGGAAGTATCAGCAAATCTAATCAATACAATCCATAATTCCTTCACTGGTGGTGGAATACATTTTGCAACTCCTGTTGCCTCTTTGAGGACCAATGAATCCGACTTGGTCCGAGGATTATTGCAGATGCTTCAAGGTTTATCGAGTTCGCTATTCTATTGGGATGACACTGGGCTGTTTTTTCGCTTCAAAAGTGGGATTTATGTGACTCATCTTTCCCAGACCAGTTTGTATCACATTCTTGA...

Protein

1 records

下载 Protein FASTA

XP_057793922.1
MVRAEMEVSANLINTIHNSFTGGGIHFATPVASLRTNESDLVRGLLQMLQGLSSSLFYWDDTGLFFRFKSGIYVTHLSQTSLYHILEQFLYAGTCLKLVDIVVNKVEKTKSFTPPTLRAFSCSVSTWLRRIRDIALQEEVKINSPNVNTAVSILGLSSSLSSLCSGAEYLFQIVHGTIPQSFLELDPSVPAADIAVHILNHLYGKLSGACLVQGGEDDAYRMLLYIFVGSLLPYIETLDSWLFQGTLDDPFDEIFFVANK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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