Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003461`

染色体: Chr02 坐标: 55901317-55907160 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003461`
名称	SmilChr02G003461
描述	lysophospholipid acyltransferase LPEAT1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55901317 - 55907160 / `+`

ID 对照

NCBI Gene ID	`LOC131010436`
GeneID	`131010436`
locus_tag	`-`
NCBI Name	`LOC131010436`
原始查询	`LOC131010436`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lysophospholipid acyltransferase LPEAT1-like
产物	lysophospholipid acyltransferase LPEAT1-like
Arabidopsis	`AT1G80950` (AT1G80950) Phospholipid/glycerol acyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844435] identity=59.6; qcov=1.06; evalue=7.42e-164; confidence=high
Rice	`Os05g0357800` - identity=63.1; qcov=0.953; evalue=2.17e-158; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0006644 (phospholipid metabolic process); GO:0008374 (GO:0008374); GO:0071618 (lysophosphatidylethanolamine acyltransferase activity)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01553 (Acyltransferase)
InterPro	-
eggNOG	-
NR	GeneID:131010436

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057793935.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057793935.1`
3	Lipid droplet	脂滴	0.20000	`XP_057793935.1`
4	Nucleus	细胞核	0.00000	`XP_057793935.1`
5	Chromosome	染色体	0.00000	`XP_057793935.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55901735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,C47,C48
`Chr2:55901954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C5
`Chr2:55902029`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B17,D10
`Chr2:55902035`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B135,B49,C58
`Chr2:55903357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B120,B77,B85
`Chr2:55903365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr2:55903458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:55906005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B72,C5
`Chr2:55906377`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B77,B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793935.1

389 aa

194

389

Acyltransferase

PF01553 Acyltransferase 181-291 aa

XP_057793936.1

381 aa

190

381

Acyltransferase

PF01553 Acyltransferase 181-291 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793935.1`	Pfam	`PF01553`	Acyltransferase	Family	181	291	1.7e-17	64.1	Acyltransferase
`XP_057793936.1`	Pfam	`PF01553`	Acyltransferase	Family	181	291	1.7e-17	64.2	Acyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937953.1
ATTAATTGTAATTTGATTTATCAAAAAATATGTTTTGTCCTTTTCATTTGTCTTATTTATCATTCTGCATAAATCCAATCTTAAAGTCTAAACCCTAAACATGGTCCCACCTATGCGCCACAATACACATAAATTTGAACAGCTACGATTCGAGACATCAACGCTACTTAACTACCACACACAAAAACCAACATAAAATAAACCGCAATCCGCACGCGCCGACCACAAGCGCGTCATCACCACAGCCCAACCAGATCTTT...

XM_057937952.1
ATTAATTGTAATTTGATTTATCAAAAAATATGTTTTGTCCTTTTCATTTGTCTTATTTATCATTCTGCATAAATCCAATCTTAAAGTCTAAACCCTAAACATGGTCCCACCTATGCGCCACAATACACATAAATTTGAACAGCTACGATTCGAGACATCAACGCTACTTAACTACCACACACAAAAACCAACATAAAATAAACCGCAATCCGCACGCGCCGACCACAAGCGCGTCATCACCACAGCCCAACCAGATCTTT...

CDS

2 records

下载 CDS FASTA

LOC131010436
ATGGAGTCGGAGCTCAAGGTCCTAACTCGGCAGTCCACGAGCCAGCGGCCCGGGCCCGAACCCGAACAAGATGACCGGCCGCTTCTCAAACCGGAACCCGAACCGGACACGCCGCAGAGACCTGCTCCCGAACCGGGGCAGAGCATCGAGGAGATGGAGAAGAAGTACGCGGCGTACGTGCGGCGTGACGTGTACGGTACGATGGGGCGTGGGAAGCTGTCGTGGGCGGAGAGACTGTGGCTGGTGCCGAGATTGGTGAT...

Protein

2 records

下载 Protein FASTA

XP_057793935.1
MESELKVLTRQSTSQRPGPEPEQDDRPLLKPEPEPDTPQRPAPEPGQSIEEMEKKYAAYVRRDVYGTMGRGKLSWAERLWLVPRLVILVPIRVVAGMTILVSYYVICRVCTAFRAPNREEGGEEQEDYAHLRGWRRAVILRTGRFLSRAMLFVFGFYWISETSNENESGDHSDGLKRYGAIISNHVSYIDILYHMSSSFPSFVAKRSVSKLPLVGLISKCLGCVFVQRELKSSDFKGVSGVVTERIREAYQDEFAPRMII...

XP_057793936.1
MESELKVLTRQSTSQRPGPEPEQDDRPLLKPEPEPDTPQRPAPEPGQSIEEMEKKYAAYVRRDVYGTMGRGKLSWAERLWLVPRLVILVPIRVVAGMTILVSYYVICRVCTAFRAPNREEGGEEQEDYAHLRGWRRAVILRTGRFLSRAMLFVFGFYWISETSNENESGDHSDGLKRYGAIISNHVSYIDILYHMSSSFPSFVAKRSVSKLPLVGLISKCLGCVFVQRELKSSDFKGVSGVVTERIREAYQDEFAPRMII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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