Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003468

染色体: Chr02 坐标: 55983096-55985779 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003468
名称SmilChr02G003468
描述protein SICKLE
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向55983096 - 55985779 / +

ID 对照

NCBI Gene IDLOC131010444
GeneID131010444
locus_tag-
NCBI NameLOC131010444
原始查询LOC131010444

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述protein SICKLE
产物protein SICKLE
ArabidopsisAT4G24500 (SIC)
hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:828552]
identity=33.7; qcov=1.08; evalue=1.79e-27; confidence=low
RiceOs02g0510300
-
identity=38.6; qcov=0.194; evalue=1.35e-07; confidence=weak
GOGO:0000398 (mRNA splicing, via spliceosome); GO:0035196 (miRNA processing); GO:1903730 (GO:1903730)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131010444

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057793950.1
2 Nucleus 细胞核 1.00000 XP_057793953.1
3 Cytoplasmic granule 细胞质颗粒 0.80000 XP_057793950.1
4 Cytoplasmic ribonucleoprotein granule Cytoplasmic ribonucleoprotein granule 0.40000 XP_057793950.1
5 Stress granule Stress granule 0.20000 XP_057793950.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:55984354 G A EMS_canonical_SNV CDS_variant 2 B65,B72
Chr2:55985007 C T EMS_canonical_SNV CDS_variant 2 A21,B69
Chr2:55985059 C T EMS_canonical_SNV CDS_variant 5 B111,B89,C1,C31,C85
Chr2:55985101 C T EMS_canonical_SNV CDS_variant 1 B10
Chr2:55985156 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:55985443 C T EMS_canonical_SNV CDS_variant 3 C2,C32,C68
Chr2:55985569 C T EMS_canonical_SNV CDS_variant 2 B136,C37
Chr2:55985603 C T EMS_canonical_SNV CDS_variant 2 A5,B107
Chr2:55985605 G A EMS_canonical_SNV CDS_variant 1 B65

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057937971.1
TTGCGACTTAAAAAAAAGGGTAAGAAGAAGAAGACGACGAAAGCAAAATCCCCAATTCCGAAAAACCAAACCCTAAACTCCTCCCTCCCTCATTCCAATCCGTCAACTTCCTTCAATTCTTTCACAACTCAAGAGACATTAAATTAAACCCCAAAACAGATTCTTTACACCAACCGCCGCGCCGAATTCGCGACTTAACTCGTCGCCGCCAAGGCCTCCCAGCGGCGAGTCATCCTCGCGGCCAACAGCCATCTCCTAGC...
XM_057937968.1
TGCGACTTAAAAAAAAGGGTAAGAAGAAGAAGACGACGAAAGCAAAATCCCCAATTCCGAAAAACCAAACCCTAAACTCCTCCCTCCCTCATTCCAATCCGTCAACTTCCTTCAATTCTTTCACAACTCAAGAGACATTAAATTAAACCCCAAAACAGATTCTTTACACCAACCGCCGCGCCGAATTCGCGACTTAACTCGTCGCCGCCAAGGCCTCCCAGCGGCGAGTCATCCTCGCGGCCAACAGCCATCTCCTAGCC...

CDS

4 records

下载 CDS FASTA
LOC131010444
ATGGAGGAGTCTCAGAAAAGAAGGGAAAGGCTGAAGGCAATGCGAATTGAAGCTGCTAATACAGCAGTTAATGCCGACACTGATAGTTTATTGGCATCTGGTGGCCTTTCAAACCCTCTTGTTGAAGGAGAAAGCACTTCCATTCCAACTAAATGTTTTTCTCCAAGATTTGATTATTATACTGACCCTATGGCAGCATTCTCTGGAAGTAGGAGAGATAACATCACTCCTCAGGTCTCACACGGACACTTCAACATGCT...
LOC131010444
ATGGAGGAGTCTCAGAAAAGAAGGGAAAGGCTGAAGGCAATGCGAATTGAAGCTGCTAATACAGCAGTTAATGCCGACACTGATAGTTTATTGGCATCTGGTGGCCTTTCAAACCCTCTTGTTGAAGGAGAAAGCACTTCCATTCCAACTAAATGTTTTTCTCCAAGATTTGATTATTATACTGACCCTATGGCAGCATTCTCTGGAAGTAGGAGAGATAACATCACTCCTCAGGTCTCACACGGACACTTCAACATGCT...

Protein

4 records

下载 Protein FASTA
XP_057793950.1
MEESQKRRERLKAMRIEAANTAVNADTDSLLASGGLSNPLVEGESTSIPTKCFSPRFDYYTDPMAAFSGSRRDNITPQVSHGHFNMLPRPTHQNMSPGPTYQGMTPNQSYQPPGVNHPDQRIFQAPGANFNQSPLGRPMELAGRPQGNPPHQNMTPGPTYQSMTPNQSYQPPGVNRPDQRIFQVPGAHFNQSPLGQPMELAGRPQGNPPNAWGGPGALNYTSPSNMSRGRHFGNRSFGQEDHPYYGRGRGQNYYSSNHAS...
XP_057793951.1
MEESQKRRERLKAMRIEAANTAVNADTDSLLASGGLSNPLVEGESTSIPTKCFSPRFDYYTDPMAAFSGSRRDNITPQVSHGHFNMLPRPTHQNMSPGPTYQGMTPNQSYQPPGVNHPDQRIFQAPGANFNQSPLGRPMELAGRPQGNPPHQNMTPGPTYQSMTPNQSYQPPGVNRPDQRIFQVPGAHFNQSPLGQPMELAGRPQGNPPNAWGGPGALNYTSPSNMSRGRHFGNRSFGQEDHPYYGRGRGQNYYSSNHAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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