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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003469

染色体: Chr02 坐标: 55986963-56001551 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003469
名称SmilChr02G003469
描述probable serine/threonine protein kinase IRE4
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向55986963 - 56001551 / -

ID 对照

NCBI Gene IDLOC131010445
GeneID131010445
locus_tag-
NCBI NameLOC131010445
原始查询LOC131010445

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable serine/threonine protein kinase IRE4
产物probable serine/threonine protein kinase IRE4
ArabidopsisAT1G45160 (AT1G45160)
Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841084]
identity=52.5; qcov=1.01; evalue=0; confidence=high
RiceOs03g0711800
-
identity=51.3; qcov=0.784; evalue=0; confidence=high
GOGO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG-
PfamPF00069 (Pkinase); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr); PF26031 (IREH1)
InterPro-
eggNOG-
NRGeneID:131010445

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057793955.1
2 Nucleus 细胞核 1.00000 XP_057793958.1
3 Cytosol 细胞质基质 0.40000 XP_057793955.1
4 Chromosome 染色体 0.00000 XP_057793955.1
5 Centromere 着丝粒 0.00000 XP_057793955.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:55987321 G A EMS_canonical_SNV CDS_variant 1 B36
Chr2:55987574 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:55987605 C T EMS_canonical_SNV CDS_variant 1 C22
Chr2:55992198 G A EMS_canonical_SNV CDS_variant 1 B1
Chr2:55994029 TA T 1bp_deletion frameshift_variant 1 B98
Chr2:55994029 TA T 1bp_deletion CDS_variant 1 B98
Chr2:55995096 C T EMS_canonical_SNV CDS_variant 4 A21,A5,B69,B7
Chr2:55997142 G A EMS_canonical_SNV CDS_variant 1 C71
Chr2:55998119 G A EMS_canonical_SNV CDS_variant 4 A21,A5,B69,B7
Chr2:55998442 C T EMS_canonical_SNV CDS_variant 1 C37
Chr2:55998788 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:55998861 G A EMS_canonical_SNV CDS_variant 1 B107

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793955.1
1100 aa
N
1
550
1100
IREH1
PK_Tyr_Ser-Thr
Pkinase
ABC1
C
PF26031 IREH1 168-286 aa PF07714 PK_Tyr_Ser-Thr 696-964 aa PF00069 Pkinase 696-978 aa PF03109 ABC1 768-840 aa
XP_057793956.1
1099 aa
N
1
550
1099
IREH1
PK_Tyr_Ser-Thr
Pkinase
ABC1
C
PF26031 IREH1 168-286 aa PF07714 PK_Tyr_Ser-Thr 696-964 aa PF00069 Pkinase 696-978 aa PF03109 ABC1 768-840 aa
XP_057793957.1
1025 aa
N
1
512
1025
IREH1
PK_Tyr_Ser-Thr
Pkinase
ABC1
C
PF26031 IREH1 93-211 aa PF07714 PK_Tyr_Ser-Thr 621-767 aa PF00069 Pkinase 621-903 aa PF03109 ABC1 693-765 aa
XP_057793958.1
907 aa
N
1
454
907
IREH1
PK_Tyr_Ser-Thr
Pkinase
ABC1
C
PF26031 IREH1 2-93 aa PF07714 PK_Tyr_Ser-Thr 503-649 aa PF00069 Pkinase 503-785 aa PF03109 ABC1 575-647 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793955.1 Pfam PF26031 IREH1 Domain 168 286 2.2e-43 148.1 IREH1-like domain
XP_057793955.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 696 964 8.7e-31 107.9 Protein tyrosine and serine/threonine kinase
XP_057793955.1 Pfam PF00069 Pkinase Domain 696 978 6.9e-66 223.0 Protein kinase domain
XP_057793955.1 Pfam PF03109 ABC1 Domain 768 840 8.8e-06 25.8 ABC1 atypical kinase-like domain
XP_057793956.1 Pfam PF26031 IREH1 Domain 168 286 2.2e-43 148.1 IREH1-like domain
XP_057793956.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 696 964 8.7e-31 107.9 Protein tyrosine and serine/threonine kinase
XP_057793956.1 Pfam PF00069 Pkinase Domain 696 978 6.9e-66 223.0 Protein kinase domain
XP_057793956.1 Pfam PF03109 ABC1 Domain 768 840 8.8e-06 25.8 ABC1 atypical kinase-like domain
XP_057793957.1 Pfam PF26031 IREH1 Domain 93 211 2e-43 148.2 IREH1-like domain
XP_057793957.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 621 767 7.1e-31 108.2 Protein tyrosine and serine/threonine kinase
XP_057793957.1 Pfam PF00069 Pkinase Domain 621 903 5.6e-66 223.3 Protein kinase domain
XP_057793957.1 Pfam PF03109 ABC1 Domain 693 765 7.7e-06 25.9 ABC1 atypical kinase-like domain
XP_057793958.1 Pfam PF26031 IREH1 Domain 2 93 5.4e-32 111.3 IREH1-like domain
XP_057793958.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 503 649 4.8e-31 108.7 Protein tyrosine and serine/threonine kinase
XP_057793958.1 Pfam PF00069 Pkinase Domain 503 785 3.9e-66 223.9 Protein kinase domain
XP_057793958.1 Pfam PF03109 ABC1 Domain 575 647 6.2e-06 26.3 ABC1 atypical kinase-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XR_009096555.1
ACTACTGTAGTCTTATCGTTGTATCAACTATTTGAAAGTTCAAATCAGTTGGCCCTTTGGCGCACTCCAATTCATATTTCTTCTTCTTCTTCTTCTTCTTCTTCATCAATACTCTCTCTCCTCGCGCGCTTGCCCTTGCGCCTCAGTTAGATATGGCGGAACCGAGGCGAAACGACGGCGCGTCGTCTTCGCTATCTGATGTGGGGATTCCGACCGGATTGAACCGGATTAAGACTCGAAGAGTGAACCCGAATTCAGGC...
XM_057937973.1
TACTGTAGTCTTATCGTTGTATCAACTATTTGAAAGTTCAAATCAGTTGGCCCTTTGGCGCACTCCAATTCATATTTCTTCTTCTTCTTCTTCTTCTTCTTCATCAATACTCTCTCTCCTCGCGCGCTTGCCCTTGCGCCTCAGTTAGATATGGCGGAACCGAGGCGAAACGACGGCGCGTCGTCTTCGCTATCTGATGTGGGGATTCCGACCGGATTGAACCGGATTAAGACTCGAAGAGTGAACCCGAATTCAGGCGA...

CDS

4 records

下载 CDS FASTA
LOC131010445
ATGGCGGAACCGAGGCGAAACGACGGCGCGTCGTCTTCGCTATCTGATGTGGGGATTCCGACCGGATTGAACCGGATTAAGACTCGAAGAGTGAACCCGAATTCAGGCGATGATGAGTCCGATCAGTTTAACGAGTCGCCGAGTAGTGGATTTTCGATTGCGGCAGCTCATATGAAGCAGAAGCTCAAGGCTTTGAGTAAAGGACACGTGAAATTTGGTCGTTCTAGAGAAGGATTCCGCAAAGGAAGGAAGATAGCTCG...
LOC131010445
ATGGCGGAACCGAGGCGAAACGACGGCGCGTCGTCTTCGCTATCTGATGTGGGGATTCCGACCGGATTGAACCGGATTAAGACTCGAAGAGTGAACCCGAATTCAGGCGATGATGAGTCCGATCAGTTTAACGAGTCGCCGAGTAGTGGATTTTCGATTGCGGCAGCTCATATGAAGCAGAAGCTCAAGGCTTTGAGTAAAGGACACGTGAAATTTGGTCGTTCTAGAGAAGGATTCCGCAAAGGAAGGAAGATAGCTCG...

Protein

4 records

下载 Protein FASTA
XP_057793955.1
MAEPRRNDGASSSLSDVGIPTGLNRIKTRRVNPNSGDDESDQFNESPSSGFSIAAAHMKQKLKALSKGHVKFGRSREGFRKGRKIARWFTSSLVKDSDQPVGDFPRTKNSKLEFNKPSKEDPRRKLRKTWINQSGDVVPNATSTKVPKCIKSFSHELGLTGGVQSPNPRAHSFNDLKELLGSLRSRFDAAKKVMDIELGSFSREVLEILQKVEILTPDEYKMAEELFVLAQQCIDMTSLDFRTKCEKIVQDLTAKRQTCQ...
XP_057793956.1
MAEPRRNDGASSSLSDVGIPTGLNRIKTRRVNPNSGDDESDQFNESPSSGFSIAAAHMKQKLKALSKGHVKFGRSREGFRKGRKIARWFTSSLVKDSDQPVGDFPRTKNSKLEFNKPSKEDPRRKLRKTWINQSGDVVPNATSTKVPKCIKSFSHELGLTGGVQSPNPRAHSFNDLKELLGSLRSRFDAAKKVMDIELGSFSREVLEILQKVEILTPDEYKMAEELFVLAQQCIDMTSLDFRTKCEKIVQDLTAKRQTCQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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