Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003499`

染色体: Chr02 坐标: 56202857-56205864 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003499`
名称	SmilChr02G003499
描述	uncharacterized SmilChr02G003499
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	56202857 - 56205864 / `-`

ID 对照

NCBI Gene ID	`LOC131010465`
GeneID	`131010465`
locus_tag	`-`
NCBI Name	`LOC131010465`
原始查询	`LOC131010465`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os06g0704400; species=rice; confidence=low
产物	hit=Os06g0704400; species=rice; confidence=low
Arabidopsis	`AT1G06740` (MUG3) MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=25.3; qcov=0.826; evalue=3.2e-66; confidence=low
Rice	`Os06g0704400` - identity=33.7; qcov=0.814; evalue=1.04e-114; confidence=low
GO	GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:131010465

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793981.1`
2	Chromosome	染色体	0.00000	`XP_057793981.1`
3	Centromere	着丝粒	0.00000	`XP_057793981.1`
4	Chromatin	染色质	0.00000	`XP_057793981.1`
5	Telomere	端粒	0.00000	`XP_057793981.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:56202955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:56202957`	`G`	`A`	EMS_canonical_SNV	stop_gained	57	A13,A25,A6,B100,B103,B118,B119,B125,B134,B135,B136,B14,B16,B17,B22,B23,B25,B28,B31,B40,B44,B47,B48,B49,B50,B53,B54,B63,B67,B73,B76,B78,B83,B88,B95,C11,C14,C15,C18,C24,C27,C34,C43,C5,C50,C53,C59,C62,C64,C65,C66,C69,C73,C81,C84,D1,D5
`Chr2:56203003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:56203008`	`C`	`CT`	1bp_insertion	frameshift_variant	10	B124,B22,B33,B46,B62,B80,C25,C6,C60,C74
`Chr2:56203016`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:56203024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B117,B136,B52,C54
`Chr2:56203116`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr2:56203132`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:56203205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B110,B80
`Chr2:56203218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:56203272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B135,B14,B56,C75
`Chr2:56203280`	`TCC`	`T`	2bp_deletion	frameshift_variant	2	C73,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793981.1

810 aa

405

810

DBD_Tnp_Mut

MULE

Transposase_mut

SWIM

PF03108 DBD_Tnp_Mut 227-284 aa PF10551 MULE 425-520 aa PF00872 Transposase_mut 455-525 aa PF04434 SWIM 674-702 aa

XP_057793982.1

810 aa

405

810

DBD_Tnp_Mut

MULE

Transposase_mut

SWIM

PF03108 DBD_Tnp_Mut 227-284 aa PF10551 MULE 425-520 aa PF00872 Transposase_mut 455-525 aa PF04434 SWIM 674-702 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793981.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	227	284	1.3e-07	31.9	MuDR family transposase
`XP_057793981.1`	Pfam	`PF10551`	MULE	Domain	425	520	1.7e-17	64.3	MULE transposase domain
`XP_057793981.1`	Pfam	`PF00872`	Transposase_mut	Family	455	525	2.4e-05	24.1	Transposase, Mutator family
`XP_057793981.1`	Pfam	`PF04434`	SWIM	Domain	674	702	1.2e-08	35.0	SWIM zinc finger
`XP_057793982.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	227	284	1.3e-07	31.9	MuDR family transposase
`XP_057793982.1`	Pfam	`PF10551`	MULE	Domain	425	520	1.7e-17	64.3	MULE transposase domain
`XP_057793982.1`	Pfam	`PF00872`	Transposase_mut	Family	455	525	2.4e-05	24.1	Transposase, Mutator family
`XP_057793982.1`	Pfam	`PF04434`	SWIM	Domain	674	702	1.2e-08	35.0	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937998.1
CAACTAAACCCCTATAGTCCATGTTTTGCTTCAAGTAAGCCCCTCCGTCTAACGGATACTTAACTCCGTCCGTCTTTTATTTTTTTTTGATTTTTTTATTCCGTGGGGCCCACCATTAATAGTTGGCGCGGTTTAGTTAGAGAATATGAATCGTCTCCCTCTTCACTTGCTGCAAAATCCGAAGGGAAGAAGAAGAAGAAGGTTTCAGAGGGATTTCAACCTGTTCCAGACGAATAGGATCTCCTCCATAGCTACTTTCA...

XM_057937999.1
CAACTAAACCCCTATAGTCCATGTTTTGCTTCAAGTAAGCCCCTCCGTCTAACGGATACTTAACTCCGTCCGTCTTTTATTTTTTTTTGATTTTTTTATTCCGTGGGGCCCACCATTAATAGTTGGCGCGGTTTAGTTAGAGAATATGAATCGTCTCCCTCTTCACTTGCTGCAAAATCCGAAGGGAAGAAGAAGAAGAAGGTTTCAGAGGGATTTCAACCTGTTCCAGACGAATAGGATCTCCTCCATAGCTACTTTCA...

CDS

2 records

下载 CDS FASTA

LOC131010465
ATGCCGCCGCCTGTTACTTTTGTTTTCAATTTTTTTGGTTTATGGAAGAAAGATTCTGAATCCGGAAAATTGCTGTATGACGGGTATAATTCTGAGGAAATTAAGGATAACATAGAAAAAATGACTTATGAGCGCATACTAGATGAATTCGCTAAGTGTTATGACAGTAAACCTAACAAAGTATACGCTCTAGATGAAGATTATCACATTGAGGCTGGATTAGTGCTACTTAGGGACTCAACGCATTGTCTTAAGGTGTT...

Protein

2 records

下载 Protein FASTA

XP_057793981.1
MPPPVTFVFNFFGLWKKDSESGKLLYDGYNSEEIKDNIEKMTYERILDEFAKCYDSKPNKVYALDEDYHIEAGLVLLRDSTHCLKVFDYFECLGAEQIMLFADHNDDPMPPTTLLPLFDEALANANDELENTHGVEIEIDVEGIQSVADELETGEGRVEGQDRGDEVETGAGIEADLGGSEDEGDHSDHTTDDSSMYTDNQSATDDEVVMHDPVVDSAAEGEQGYFALGMTFAGAKDCRESINNYAVRFGYKIKFLKNEP...

XP_057793982.1
MPPPVTFVFNFFGLWKKDSESGKLLYDGYNSEEIKDNIEKMTYERILDEFAKCYDSKPNKVYALDEDYHIEAGLVLLRDSTHCLKVFDYFECLGAEQIMLFADHNDDPMPPTTLLPLFDEALANANDELENTHGVEIEIDVEGIQSVADELETGEGRVEGQDRGDEVETGAGIEADLGGSEDEGDHSDHTTDDSSMYTDNQSATDDEVVMHDPVVDSAAEGEQGYFALGMTFAGAKDCRESINNYAVRFGYKIKFLKNEP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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