Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003538`

染色体: Chr02 坐标: 56520817-56524649 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003538`
名称	SmilChr02G003538
描述	glucose-1-phosphate adenylyltransferase large subunit 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	56520817 - 56524649 / `-`

ID 对照

NCBI Gene ID	`LOC131010504`
GeneID	`131010504`
locus_tag	`-`
NCBI Name	`LOC131010504`
原始查询	`LOC131010504`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glucose-1-phosphate adenylyltransferase large subunit 1-like
产物	glucose-1-phosphate adenylyltransferase large subunit 1-like
Arabidopsis	`AT1G27680` (APL2) ADPGLC-PPase large subunit [Source:NCBI gene (formerly Entrezgene);Acc:839660] identity=74.8; qcov=0.937; evalue=0; confidence=high
Rice	`Os05g0580000` (OsAGPL3) - identity=71.4; qcov=0.845; evalue=0; confidence=high
GO	GO:0005978 (glycogen biosynthetic process); GO:0008878 (glucose-1-phosphate adenylyltransferase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00483 (NTP_transferase); PF25247 (LbH_GLGC)
InterPro	-
eggNOG	-
NR	GeneID:131010504

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057794021.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057794021.1`
3	Nucleus	细胞核	0.00000	`XP_057794021.1`
4	Chromosome	染色体	0.00000	`XP_057794021.1`
5	Centromere	着丝粒	0.00000	`XP_057794021.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:56521063`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B93,C2
`Chr2:56522125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr2:56522206`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr2:56522261`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:56522289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr2:56522510`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B135,C19,C7
`Chr2:56523126`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A18
`Chr2:56523126`	`TG`	`T`	1bp_deletion	CDS_variant	1	A18
`Chr2:56524041`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794021.1

521 aa

260

521

NTP_transferase

LbH_GLGC

PF00483 NTP_transferase 90-367 aa PF25247 LbH_GLGC 386-519 aa

XP_057794022.1

521 aa

260

521

NTP_transferase

LbH_GLGC

PF00483 NTP_transferase 90-367 aa PF25247 LbH_GLGC 386-519 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794021.1`	Pfam	`PF00483`	NTP_transferase	Family	90	367	1e-74	251.9	Nucleotidyl transferase
`XP_057794021.1`	Pfam	`PF25247`	LbH_GLGC	Repeat	386	519	5.9e-55	185.6	GLGC left-handed parallel beta-helix domain
`XP_057794022.1`	Pfam	`PF00483`	NTP_transferase	Family	90	367	1e-74	251.9	Nucleotidyl transferase
`XP_057794022.1`	Pfam	`PF25247`	LbH_GLGC	Repeat	386	519	5.9e-55	185.6	GLGC left-handed parallel beta-helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938039.1
GTAGTATTCGCGGTCTGAACACTAATTTCGGCAAAGTTTAGACCAATCCAACTAAGTTTACTCCACATTGATGCCTGTACTCACCCAAAAAAAATGAAGAAAAAAAAAAATCTGTTTTATTTATTTATTTTTTTTTTTGGGAGGAAAAGCTACCATCAAAATTAATTGTTCAGAACCTCTCCTTTTCTTAGTCACGTGCGTTAACTACAGTACTTTCCTACTTCGTACAAGCCTTGATTGTTCAATATTTGCCTCATAAA...

XM_057938038.1
GTCACGTGCGTTAACTACAGTACTTTCCTACTTCGTACAAGCCTTGATTGTTCAATATTTGCCTCATAAATTTTCATTTTTTTGGCTTCCCTAGGATTTGTTGATTGTGATCTTCTTTCTTGTTTTCCATTTGTGTTGTCAATTTTGTTGTCCCAACTGGGTTTTGGCTGTAATTAATGTTTCCGGATTGAATCTTTAGGGTGGCGAAAGATCATTTGGTGAATCATTTTCTGCGTCATTACCACAAAAATGGATTCATG...

CDS

2 records

下载 CDS FASTA

LOC131010504
ATGGATTCATGTTGTGTCGCCATTAGAGCTAATGTGCCGCCACCGAGCCGGCGGGAAAATGGGTTTTTTGGAAAGAAACTTAGGAGTTCGAAAGAAATTGTTTTTGGATCACGAGTTTGGAAGAAAAAGGGTGAGAATGGGACGAGAAATTTGAAGCCGGGAGTTGTATACTCTGTTCAAACACGTGATATCAACAAAGAAATGGCTGCACTTCAATCCACACCATTTCCTGAGGAGACTCCGAATGCAAATCCAGCAAC...

Protein

2 records

下载 Protein FASTA

XP_057794021.1
MDSCCVAIRANVPPPSRRENGFFGKKLRSSKEIVFGSRVWKKKGENGTRNLKPGVVYSVQTRDINKEMAALQSTPFPEETPNANPATVASIILGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFIMTQFNSFSLNRHLARTYNFGNGMNFGDGFVEVLAATQTSGETGKRWFQGTADAVRQFIWVFDAAKNKNIEHIVILSGDHLYRMDYMDFVQKHIDTNADITVSCVPMDDSRASDFGLMKIDK...

XP_057794022.1
MDSCCVAIRANVPPPSRRENGFFGKKLRSSKEIVFGSRVWKKKGENGTRNLKPGVVYSVQTRDINKEMAALQSTPFPEETPNANPATVASIILGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFIMTQFNSFSLNRHLARTYNFGNGMNFGDGFVEVLAATQTSGETGKRWFQGTADAVRQFIWVFDAAKNKNIEHIVILSGDHLYRMDYMDFVQKHIDTNADITVSCVPMDDSRASDFGLMKIDK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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