当前解析结果
SmilChr01G003878| 统一新 Gene ID | SmilChr01G003878 |
|---|---|
| 名称 | SmilChr01G003878 |
| 描述 | uncharacterized SmilChr01G003878 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 57107397 - 57108826 / - |
| NCBI Gene ID | LOC131010509 |
|---|---|
| GeneID | 131010509 |
| locus_tag | - |
| NCBI Name | LOC131010509 |
| 原始查询 | LOC131010509 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=weak |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G09510 (AT3G09510)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108] identity=24.5; qcov=0.964; evalue=3.83e-30; confidence=weak |
| Rice | Os01g0967700- identity=27; qcov=0.455; evalue=2.35e-10; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010509 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057794033.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057794033.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057794033.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794033.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794033.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:57107979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B125,C72 |
Chr1:57108010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,C16 |
Chr1:57108062 |
G |
A |
EMS_canonical_SNV | stop_gained | 21 | A6,B103,B105,B122,B136,B24,B26,B49,B5,B55,B71,B76,C19,C35,C46,C50,C6,C68,C78,C85,D8 |
Chr1:57108096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B71 |
Chr1:57108123 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B71 |
Chr1:57108158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,A4,B117,B12,B23 |
Chr1:57108167 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C46 |
Chr1:57108222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B123,B56,B85,C32,C73 |
Chr1:57108276 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B123,B56,C1,C13,C37,C73 |
Chr1:57108332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,C62,C82 |
Chr1:57108370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,B56,B85,C73 |
Chr1:57108415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794033.1PF13966
zf-RVT 111-204 aa
PF13456
RVT_3 315-424 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794033.1 |
Pfam | PF13966 |
zf-RVT | Domain | 111 | 204 | 8.3e-16 | 59.1 | zinc-binding in reverse transcriptase |
XP_057794033.1 |
Pfam | PF13456 |
RVT_3 | Domain | 315 | 424 | 1.3e-11 | 45.2 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。