Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003647`

染色体: Chr02 坐标: 57850290-57853512 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003647`
名称	SmilChr02G003647
描述	thylakoid lumenal 29 kDa protein, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	57850290 - 57853512 / `+`

ID 对照

NCBI Gene ID	`LOC131010604`
GeneID	`131010604`
locus_tag	`-`
NCBI Name	`LOC131010604`
原始查询	`LOC131010604`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	thylakoid lumenal 29 kDa protein, chloroplastic
产物	thylakoid lumenal 29 kDa protein%2C chloroplastic
Arabidopsis	`AT4G09010` (TL29) ascorbate peroxidase 4 [Source:NCBI gene (formerly Entrezgene);Acc:826480] identity=75.6; qcov=0.961; evalue=3.41e-154; confidence=high
Rice	`Os04g0602100` - identity=70.1; qcov=1; evalue=1.45e-148; confidence=high
GO	GO:0000302 (response to reactive oxygen species); GO:0004601 (peroxidase activity); GO:0009535 (chloroplast thylakoid membrane); GO:0020037 (heme binding); GO:0034599 (cellular response to oxidative stress); GO:0042744 (hydrogen peroxide catabolic process)
KEGG	-
Pfam	PF00141 (peroxidase)
InterPro	-
eggNOG	-
NR	GeneID:131010604

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057794188.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057794188.1`
3	Chloroplast thylakoid	类囊体	0.80000	`XP_057794188.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057794188.1`
5	Nucleus	细胞核	0.00000	`XP_057794189.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:57851200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B64,C49,C71,D8
`Chr2:57851203`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:57851214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr2:57851313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:57851908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B82
`Chr2:57851991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C8,C85
`Chr2:57852025`	`C`	`T`	EMS_canonical_SNV	stop_gained	14	A3,B104,B106,B42,B43,B58,B59,B63,B66,B82,B95,C39,C81,D11
`Chr2:57852801`	`GA`	`G`	1bp_deletion	frameshift_variant	1	A21
`Chr2:57852801`	`GA`	`G`	1bp_deletion	CDS_variant	1	A21
`Chr2:57852814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794188.1

346 aa

173

346

peroxidase

PF00141 peroxidase 96-270 aa

XP_057794189.1

281 aa

140

281

peroxidase

PF00141 peroxidase 31-205 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794188.1`	Pfam	`PF00141`	peroxidase	Domain	96	270	2.8e-17	64.0	Peroxidase
`XP_057794189.1`	Pfam	`PF00141`	peroxidase	Domain	31	205	1.3e-17	65.1	Peroxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938205.1
AGAGTAGGATAACGCAATATGAAGAAAGCCAGGAGCGCATTCCACGTAGACTTTCATACTACAAAAATGCAAACACCACACCTCCTCCAATCCATCTCTTCTCTTCTCACATCACACACACACACACACTAACTCGAGAGAGAGAGAGAGAGATGGGAATGGTCTCCTTCATTTCTACAGTCCCTTCACTGGTGTCGTTGGTGCCATCACCATCCACCTCAGCACCCACTACTAGATACATTCACTCAGGCACTGTAAAT...

XM_057938206.1
TGGCAGGGCACTGTAAATTGCAAAATTGAAAGTGATTGCGATGATGAGGATCGCTTCTCGCGACGACGCGTTTTGCATTGCTTCGGTGCTACCGTTGGCATCTTGACTCTTCTCAGGAAATGATAGCAAGATCCAGCTCATTAATTGAAGTGGCAAATGCCGCGGACTTGATACAACGCAGACAACGTTCAGACTTTCAGTCGAAAGTAAAGGACACTCTTTATAAAGGACTGAAGGGAAACCCAGTTCTCATCCCCTCT...

CDS

2 records

下载 CDS FASTA

LOC131010604
ATGGGAATGGTCTCCTTCATTTCTACAGTCCCTTCACTGGTGTCGTTGGTGCCATCACCATCCACCTCAGCACCCACTACTAGATACATTCACTCAGGCACTGTAAATTGCAAAATTGAAAGTGATTGCGATGATGAGGATCGCTTCTCGCGACGACGCGTTTTGCATTGCTTCGGTGCTACCGTTGGCATCGAAATGATAGCAAGATCCAGCTCATTAATTGAAGTGGCAAATGCCGCGGACTTGATACAACGCAGACA...

LOC131010604
ATGATAGCAAGATCCAGCTCATTAATTGAAGTGGCAAATGCCGCGGACTTGATACAACGCAGACAACGTTCAGACTTTCAGTCGAAAGTAAAGGACACTCTTTATAAAGGACTGAAGGGAAACCCAGTTCTCATCCCCTCTGTATTAACATTGGCACTCAACGATGCTATAACTTATGATAAGGCAACAAAAACTGGCGGCCCCAATGGATCAATACGGCTTAGCTCAGAGATTAGCCGACCAGAAAATAAAAACCTTGC...

Protein

2 records

下载 Protein FASTA

XP_057794188.1
MGMVSFISTVPSLVSLVPSPSTSAPTTRYIHSGTVNCKIESDCDDEDRFSRRRVLHCFGATVGIEMIARSSSLIEVANAADLIQRRQRSDFQSKVKDTLYKGLKGNPVLIPSVLTLALNDAITYDKATKTGGPNGSIRLSSEISRPENKNLAAALSFLEEAKKEIDSYSKGGPISYSDLIQFAAQSAVKSTFLASAIRKCGGNEEKGSLLYTAYGSSGQWGLFDKQFGRSDAEEADPEGRVPQWEKATVEEIKNKFTAIG...

XP_057794189.1
MIARSSSLIEVANAADLIQRRQRSDFQSKVKDTLYKGLKGNPVLIPSVLTLALNDAITYDKATKTGGPNGSIRLSSEISRPENKNLAAALSFLEEAKKEIDSYSKGGPISYSDLIQFAAQSAVKSTFLASAIRKCGGNEEKGSLLYTAYGSSGQWGLFDKQFGRSDAEEADPEGRVPQWEKATVEEIKNKFTAIGFGPRQVAVMSAFFGPDQLATEALLASDPQVLPWVQKYQRSRETVSQTDYEVDLITTLTKMSSLGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器