Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003650`

染色体: Chr02 坐标: 57880193-57886435 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003650`
名称	SmilChr02G003650
描述	uncharacterized SmilChr02G003650
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	57880193 - 57886435 / `-`

ID 对照

NCBI Gene ID	`LOC131010607`
GeneID	`131010607`
locus_tag	`-`
NCBI Name	`LOC131010607`
原始查询	`LOC131010607`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521]; symbol=AT1G09890; hit=AT1G09890; species=arabidopsis; confidence=high
产物	Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521]; symbol=AT1G09890; hit=AT1G09890; species=arabidopsis; confidence=high
Arabidopsis	`AT1G09890` (AT1G09890) Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521] identity=62.1; qcov=0.968; evalue=0; confidence=high
Rice	`Os08g0554100` - identity=58; qcov=0.947; evalue=0; confidence=high
GO	GO:0003824 (catalytic activity); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF06045 (Rhamnogal_lyase); PF14683 (CBM-like); PF14686 (fn3_3)
InterPro	-
eggNOG	-
NR	GeneID:131010607

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057794193.1`
2	Cell wall	细胞壁	0.60000	`XP_057794194.1`
3	Secreted	分泌到胞外	0.20000	`XP_057794194.1`
4	Nucleus	细胞核	0.00000	`XP_057794193.1`
5	Chromosome	染色体	0.00000	`XP_057794193.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:57880562`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B63,B83,B98,C77
`Chr2:57880592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,C38
`Chr2:57880684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:57880724`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,B118,B21,C43,C83
`Chr2:57880725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:57880885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,C48
`Chr2:57881132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,C83
`Chr2:57881148`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr2:57881280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,D11
`Chr2:57881294`	`TA`	`T`	1bp_deletion	frameshift_variant	11	A2,B112,B126,B139,B4,B7,B76,B97,C36,C4,C62
`Chr2:57881322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A7,B33,B8,C83
`Chr2:57881596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B55,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794193.1

684 aa

342

684

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 37-239 aa PF14686 fn3_3 397-470 aa PF14683 CBM-like 484-673 aa

XP_057794194.1

662 aa

331

662

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 25-217 aa PF14686 fn3_3 375-448 aa PF14683 CBM-like 462-651 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794193.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	37	239	5.1e-81	271.8	Rhamnogalacturonate lyase family
`XP_057794193.1`	Pfam	`PF14686`	fn3_3	Domain	397	470	5.9e-27	94.0	Polysaccharide lyase family 4, domain II
`XP_057794193.1`	Pfam	`PF14683`	CBM-like	Domain	484	673	3.7e-50	170.6	Polysaccharide lyase family 4, domain III
`XP_057794194.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	25	217	2.2e-79	266.5	Rhamnogalacturonate lyase family
`XP_057794194.1`	Pfam	`PF14686`	fn3_3	Domain	375	448	4.8e-27	94.3	Polysaccharide lyase family 4, domain II
`XP_057794194.1`	Pfam	`PF14683`	CBM-like	Domain	462	651	3.5e-50	170.7	Polysaccharide lyase family 4, domain III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938210.1
TTTCCACAAAAAGGTGATTTATCTATCTTCAAATAAATATAGTTACACAAAATATATTGGTATATTGGGTCTTTTTCCTGTGTCTAAAAACAGAAAATAGGTTTTAAAAGTTGGAAATCTTGCACGTAAACAAATCAAGCAAATAAATATGCTCTGTATTTTATTTCTTACCACCTATTTTGTGGGCTGCTTTGTGAAGCAACGGCCATCTGCATTATACGTTATCACCTTCTGCCTTTTAAGTTTGGAGAAATCGTCTG...

XM_057938211.1
AACCAACCTAAATTAATCTTTACTTTTTATAGATCAAATAAAGAGATTCAAAATTGTGCTGCCTGTGTATATATGTAGAATATTGTATATGACAGTTTTTCTCTAAATAAAAGATTTGGAAAATAGAAACAATAACATTATCATGTCTGCTGCTGTGATATTTTTATTGTTATTTTCTTTTTCAAAGAGTGCTGCTGTGATGATATTGAGTAATGAAGGTGACGAGGTGGTGTTAGATAATGGATTGGTCCAACTTACAT...

CDS

2 records

下载 CDS FASTA

LOC131010607
ATGCTCTGTATTTTATTTCTTACCACCTATTTTGTGGGCTGCTTTGTGAAGCAACGGCCATCTGCATTATACGTTATCACCTTCTGCCTTTTAAGTTTGGAGAAATCGTCTGGTAATGGGCTACTGCAGTTACAGCTTCAGAGAGATCATGTGGTGTTAGATAATGGATTGGTCCAACTTACATTCACAAAACCAGGAGGCCATCTCATTGGAATACGCTACAATGGACTCGACAACTTGCTTGAGCTCCATAATCCAGA...

LOC131010607
ATGTCTGCTGCTGTGATATTTTTATTGTTATTTTCTTTTTCAAAGAGTGCTGCTGTGATGATATTGAGTAATGAAGGTGACGAGGTGGTGTTAGATAATGGATTGGTCCAACTTACATTCACAAAACCAGGAGGCCATCTCATTGGAATACGCTACAATGGACTCGACAACTTGCTTGAGCTCCATAATCCAGAGCTAAATGGAGGGTTTTGGGATCTTAATTGGAGTGAAGCTGGTAGCTCAGGCACACGAGGAAAATT...

Protein

2 records

下载 Protein FASTA

XP_057794193.1
MLCILFLTTYFVGCFVKQRPSALYVITFCLLSLEKSSGNGLLQLQLQRDHVVLDNGLVQLTFTKPGGHLIGIRYNGLDNLLELHNPELNGGFWDLNWSEAGSSGTRGKFDVVNGTEFQVVVQNEEQIEISFTRKWDRSLLGQHAPLSIDKRFIMLRGSSGFYSYAIYQRDESMPAFQLNEARIAFMLNIEKFVYMAMSDDRQRRMPRPEDRLPPRGRELAFPEAVLLVDPIEPEFKGEVDDKYQYSCENKDNKVHGFICI...

XP_057794194.1
MSAAVIFLLLFSFSKSAAVMILSNEGDEVVLDNGLVQLTFTKPGGHLIGIRYNGLDNLLELHNPELNGGFWDLNWSEAGSSGTRGKFDVVNGTEFQVVVQNEEQIEISFTRKWDRSLLGQHAPLSIDKRFIMLRGSSGFYSYAIYQRDESMPAFQLNEARIAFMLNIEKFVYMAMSDDRQRRMPRPEDRLPPRGRELAFPEAVLLVDPIEPEFKGEVDDKYQYSCENKDNKVHGFICIDPTIGLWQISPSNEFRTGGPIK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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