当前解析结果
SmilChr02G003674| 统一新 Gene ID | SmilChr02G003674 |
|---|---|
| 名称 | SmilChr02G003674 |
| 描述 | sucrose transport protein SUC4 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 58127791 - 58131837 / + |
| NCBI Gene ID | LOC131010630 |
|---|---|
| GeneID | 131010630 |
| locus_tag | - |
| NCBI Name | LOC131010630 |
| 原始查询 | LOC131010630 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sucrose transport protein SUC4 |
| 产物 | sucrose transport protein SUC4 |
| Arabidopsis | AT1G09960 (SUT4)sucrose transporter 4 [Source:NCBI gene (formerly Entrezgene);Acc:837530] identity=69.8; qcov=0.988; evalue=0; confidence=high |
| Rice | Os12g0641400 (OsSUT2)- identity=64.5; qcov=0.957; evalue=0; confidence=high |
| GO | GO:0005773 (vacuole); GO:0005886 (plasma membrane); GO:0008506 (sucrose:proton symporter activity); GO:0015770 (sucrose transport) |
| KEGG | - |
| Pfam | PF07690 (MFS_1); PF13347 (MFS_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010630 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057794227.1 |
| 2 | Secretory vesicle | Secretory vesicle | 0.40000 | XP_057794227.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057794227.1 |
| 4 | Vesicle | 囊泡 | 0.40000 | XP_057794227.1 |
| 5 | Lysosome | 溶酶体 | 0.20000 | XP_057794227.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:58128106 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B20,C85 |
Chr2:58128114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr2:58128115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B53,B71,C45 |
Chr2:58128178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:58128274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:58128307 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:58128380 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B95 |
Chr2:58128382 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B56 |
Chr2:58128509 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:58129647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:58129689 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:58129785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794227.1PF13347
MFS_2 51-200 aa
PF07690
MFS_1 98-451 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794227.1 |
Pfam | PF13347 |
MFS_2 | Family | 51 | 200 | 9.1e-12 | 44.9 | MFS/sugar transport protein |
XP_057794227.1 |
Pfam | PF07690 |
MFS_1 | Family | 98 | 451 | 3.2e-13 | 50.0 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。