当前解析结果
SmilChr02G003716| 统一新 Gene ID | SmilChr02G003716 |
|---|---|
| 名称 | SmilChr02G003716 |
| 描述 | uncharacterized SmilChr02G003716 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 58762587 - 58767017 / + |
| NCBI Gene ID | LOC131010669 |
|---|---|
| GeneID | 131010669 |
| locus_tag | - |
| NCBI Name | LOC131010669 |
| 原始查询 | LOC131010669 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834331]; symbol=AT5G43140; hit=AT5G43140; species=arabidopsis; confidence=high |
| 产物 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834331]; symbol=AT5G43140; hit=AT5G43140; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G43140 (AT5G43140)Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834331] identity=64.9; qcov=0.696; evalue=7.42e-88; confidence=high |
| Rice | Os12g0508100- identity=58.1; qcov=0.688; evalue=2.04e-75; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0016020 (membrane) |
| KEGG | smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04117 (Mpv17_PMP22) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010669 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057794287.1 |
| 2 | Chloroplast | 叶绿体 | 0.60000 | XP_057794287.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057794287.1 |
| 4 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057794287.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057794287.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:58762746 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B120,B77,B85 |
Chr2:58762860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr2:58763007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:58763819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:58763831 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:58763881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,C50 |
Chr2:58764015 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B96,C25 |
Chr2:58766285 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:58766388 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794287.1PF04117
Mpv17_PMP22 180-238 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794287.1 |
Pfam | PF04117 |
Mpv17_PMP22 | Family | 180 | 238 | 9.5e-17 | 61.5 | Mpv17 / PMP22 family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。