Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003762`

染色体: Chr02 坐标: 59294529-59301632 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003762`
名称	SmilChr02G003762
描述	uncharacterized SmilChr02G003762
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	59294529 - 59301632 / `-`

ID 对照

NCBI Gene ID	`LOC131010671`
GeneID	`131010671`
locus_tag	`-`
NCBI Name	`LOC131010671`
原始查询	`LOC131010671`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:839668]; symbol=AT1G27750; hit=AT1G27750; species=arabidopsis; confidence=medium
产物	nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:839668]; symbol=AT1G27750; hit=AT1G27750; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G27750` (AT1G27750) nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:839668] identity=42; qcov=0.564; evalue=1.32e-164; confidence=medium
Rice	`Os01g0765200` - identity=36.8; qcov=0.298; evalue=5.48e-66; confidence=weak
GO	GO:0003723 (RNA binding); GO:0043130 (ubiquitin binding)
KEGG	-
Pfam	PF00076 (RRM_1); PF07744 (SPOC)
InterPro	-
eggNOG	-
NR	GeneID:131010671

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794293.1`
2	Chromosome	染色体	0.00000	`XP_057794293.1`
3	Centromere	着丝粒	0.00000	`XP_057794293.1`
4	Chromatin	染色质	0.00000	`XP_057794293.1`
5	Telomere	端粒	0.00000	`XP_057794293.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:59296217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B119,B73,C38,C46
`Chr2:59296369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B28,D9
`Chr2:59296476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:59296592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:59296707`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr2:59297006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:59297353`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B133
`Chr2:59297353`	`TC`	`T`	1bp_deletion	CDS_variant	1	B133
`Chr2:59297428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:59297512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr2:59297585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:59297627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794293.1

1295 aa

648

1295

RRM_1

SPOC

PF00076 RRM_1 571-628 aa PF07744 SPOC 1143-1287 aa

XP_057794294.1

1270 aa

635

1270

RRM_1

SPOC

PF00076 RRM_1 546-603 aa PF07744 SPOC 1118-1262 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794293.1`	Pfam	`PF00076`	RRM_1	Domain	571	628	6.1e-06	26.7	RNA recognition motif
`XP_057794293.1`	Pfam	`PF07744`	SPOC	Domain	1143	1287	1.3e-22	81.1	SPOC domain
`XP_057794294.1`	Pfam	`PF00076`	RRM_1	Domain	546	603	5.9e-06	26.8	RNA recognition motif
`XP_057794294.1`	Pfam	`PF07744`	SPOC	Domain	1118	1262	1.3e-22	81.1	SPOC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938311.1
CTTAACACCAAAATTGACATCGAAAAGTAAATTACAGAGAAAAATATCGAAACTTTGTCCGTCTACTAAGTATCCGGGACTAGGTGATTCTCTCTCTTCGTATGCGCCATGGCCGCGGCGGAGCAGCCGCTCAAAAAGAGAAGATTGTACGACCCACCACCATCATCTCCCCCAGCACCACCTTCCCAAGCACAAGAACCACCTCAACGGCCACCAACCCCGCCGCCTTTGTCTCAGGATGAAATCGTTCGGAGGCGGCG...

XM_057938310.1
CTTAACACCAAAATTGACATCGAAAAGTAAATTACAGAGAAAAATATCGAAACTTTGTCCGTCTACTAAGTATCCGGGACTAGGTGATTCTCTCTCTTCGTATGCGCCATGGCCGCGGCGGAGCAGCCGCTCAAAAAGAGAAGATTGTACGACCCACCACCATCATCTCCCCCAGCACCACCTTCCCAAGCACAAGAACCACCTCAACGGCCACCAACCCCGCCGCCTTTGTCTCAGGATGAAATCGTTCGGAGGCGGCG...

CDS

2 records

下载 CDS FASTA

LOC131010671
ATGGCCGCGGCGGAGCAGCCGCTCAAAAAGAGAAGATTGTACGACCCACCACCATCATCTCCCCCAGCACCACCTTCCCAAGCACAAGAACCACCTCAACGGCCACCAACCCCGCCGCCTTTGTCTCAGGATGAAATCGTTCGGAGGCGGCGGAGTCAAGAAGCAATTCGCAATGTATTTGAGTGCTATAAGAAAATAAAGTCGTGCATCAACCGGAAGGATAAGCATTTTACGCCGGAATTGGAAGAGGCTTATCTCTC...

Protein

2 records

下载 Protein FASTA

XP_057794293.1
MAAAEQPLKKRRLYDPPPSSPPAPPSQAQEPPQRPPTPPPLSQDEIVRRRRSQEAIRNVFECYKKIKSCINRKDKHFTPELEEAYLSLITASGGCASVQRLVAEYIPRYASFCPAALDAAGKALINMHNQCITMISGGEDINGIAFETAKACILGLVDVCHAAASENPNSEVVQGTCSVVFHDVFTFFVCSFEGKSIFDIVDYSVLKIYDVAESLSDFKRKFLEEHISISLKLSKLRGLCFLSILFGLPKYSLVTLFELF...

XP_057794294.1
MAAAEQPLKKRRLYDPPPSSPPAPPSQAQEPPQRPPTPPPLSQDEIVRRRRSQEAIRNVFECYKKIKSCINRKDKHFTPELEEAYLSLITASGGCASVQRLVAEYIPRYASFCPAALDAAGKALINMHNQCITMISGGEDINGIAFETAKACILGLVDVCHAAASENPNSEVVQGTCSVVFHDVFTFFVCSFEGKSIFDIVDYSVLKIYDVAESLSDFKRKFLEEHISISLKLSKLRGLCFLSILFGLPKYSLVTLFELF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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