Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004001

染色体: Chr01 坐标: 58410274-58410891 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004001
名称SmilChr01G004001
描述AAA-ATPase At2g46620-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向58410274 - 58410891 / +

ID 对照

NCBI Gene IDLOC131010689
GeneID131010689
locus_tag-
NCBI NameLOC131010689
原始查询LOC131010689

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述AAA-ATPase At2g46620-like
产物AAA-ATPase At2g46620-like
ArabidopsisAT2G46620 (AT2G46620)
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819274]
identity=65.6; qcov=0.78; evalue=2.49e-69; confidence=high
RiceOs03g0114400 (OSJNBa0090O10.13)
-
identity=59.7; qcov=0.751; evalue=6.94e-59; confidence=high
GOGO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity)
KEGG-
PfamPF00004 (AAA); PF07728 (AAA_5)
InterPro-
eggNOG-
NRGeneID:131010689

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Peroxisome 过氧化物酶体 0.60000 XP_057794337.1
2 Cytosol 细胞质基质 0.40000 XP_057794337.1
3 Cytoplasm 细胞质 0.20000 XP_057794337.1
4 Endoplasmic reticulum 内质网 0.20000 XP_057794337.1
5 Nucleus 细胞核 0.00000 XP_057794337.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:58410280 G A EMS_canonical_SNV CDS_variant 2 B59,C68
Chr1:58410305 G A EMS_canonical_SNV CDS_variant 1 D11
Chr1:58410306 G A EMS_canonical_SNV CDS_variant 3 B115,C36,C68
Chr1:58410319 C T EMS_canonical_SNV stop_gained 24 A11,A7,B111,B132,B138,B25,B49,B60,B68,B72,B80,B84,B86,B90,B92,B99,C3,C38,C42,C50,C7,C71,C75,D7
Chr1:58410320 G A EMS_canonical_SNV CDS_variant 2 A6,B132
Chr1:58410331 G A EMS_canonical_SNV CDS_variant 2 B91,C86
Chr1:58410339 G A EMS_canonical_SNV CDS_variant 4 A13,B50,C11,C69
Chr1:58410340 C T EMS_canonical_SNV stop_gained 11 B109,B115,B24,B85,B96,C2,C32,C58,C63,C68,C69
Chr1:58410355 T TAA 2bp_insertion stop_gained,frameshift_variant 13 A19,B2,B34,B38,B39,B42,B52,B7,B71,B85,C43,C67,D5
Chr1:58410362 C T EMS_canonical_SNV CDS_variant 4 B104,B107,B16,B5
Chr1:58410364 G A EMS_canonical_SNV CDS_variant 1 B35
Chr1:58410374 G A EMS_canonical_SNV CDS_variant 4 B42,B7,C58,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057794337.1
205 aa
N
1
102
205
AAA
AAA_5
C
PF00004 AAA 25-143 aa PF07728 AAA_5 26-75 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057794337.1 Pfam PF00004 AAA Domain 25 143 3.1e-11 44.6 ATPase family associated with various cellular activities (AAA)
XP_057794337.1 Pfam PF07728 AAA_5 Domain 26 75 7.7e-05 23.4 AAA domain (dynein-related subfamily)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057938354.1
AAATTGGATTTAGAGAATTTTTTGAAATCCAGGCAGTATTACCACCGATTAGGCCGCGTTTGGAAGCGAAGCTACCTGCTGTACGGGCCGGCGGGGACCGGCAAATCCACGTTCATAGCTGCGATGGCGAAATTTCTGAGCTACGACGTCTACGAGATCAATCTGCACAAGGTGAGAAACGACGCTGATTTGAAGTACCTCCTCCTCCAAACGACGAAGAAGTCGTTGCTCGTGATCAAAGATCACGACCGTCATTTAGA...

CDS

1 records

下载 CDS FASTA
LOC131010689
AAATTGGATTTAGAGAATTTTTTGAAATCCAGGCAGTATTACCACCGATTAGGCCGCGTTTGGAAGCGAAGCTACCTGCTGTACGGGCCGGCGGGGACCGGCAAATCCACGTTCATAGCTGCGATGGCGAAATTTCTGAGCTACGACGTCTACGAGATCAATCTGCACAAGGTGAGAAACGACGCTGATTTGAAGTACCTCCTCCTCCAAACGACGAAGAAGTCGTTGCTCGTGATCAAAGATCACGACCGTCATTTAGA...

Protein

1 records

下载 Protein FASTA
XP_057794337.1
KLDLENFLKSRQYYHRLGRVWKRSYLLYGPAGTGKSTFIAAMAKFLSYDVYEINLHKVRNDADLKYLLLQTTKKSLLVIKDHDRHLEDKSPALSLSGVLNFMDGIFSCCGEERVMVFTINSKENICASILRPGRIGVHINFPLCDFTAFKNRSRRNLAVFAKKPCTFGWGGAHHKQRISLTAFKRGGILHPCFGNSGRSMRLDRI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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