当前解析结果
SmilChr01G004001| 统一新 Gene ID | SmilChr01G004001 |
|---|---|
| 名称 | SmilChr01G004001 |
| 描述 | AAA-ATPase At2g46620-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 58410274 - 58410891 / + |
| NCBI Gene ID | LOC131010689 |
|---|---|
| GeneID | 131010689 |
| locus_tag | - |
| NCBI Name | LOC131010689 |
| 原始查询 | LOC131010689 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AAA-ATPase At2g46620-like |
| 产物 | AAA-ATPase At2g46620-like |
| Arabidopsis | AT2G46620 (AT2G46620)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819274] identity=65.6; qcov=0.78; evalue=2.49e-69; confidence=high |
| Rice | Os03g0114400 (OSJNBa0090O10.13)- identity=59.7; qcov=0.751; evalue=6.94e-59; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF07728 (AAA_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010689 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 0.60000 | XP_057794337.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057794337.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057794337.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057794337.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057794337.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:58410280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,C68 |
Chr1:58410305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:58410306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,C36,C68 |
Chr1:58410319 |
C |
T |
EMS_canonical_SNV | stop_gained | 24 | A11,A7,B111,B132,B138,B25,B49,B60,B68,B72,B80,B84,B86,B90,B92,B99,C3,C38,C42,C50,C7,C71,C75,D7 |
Chr1:58410320 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,B132 |
Chr1:58410331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C86 |
Chr1:58410339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B50,C11,C69 |
Chr1:58410340 |
C |
T |
EMS_canonical_SNV | stop_gained | 11 | B109,B115,B24,B85,B96,C2,C32,C58,C63,C68,C69 |
Chr1:58410355 |
T |
TAA |
2bp_insertion | stop_gained,frameshift_variant | 13 | A19,B2,B34,B38,B39,B42,B52,B7,B71,B85,C43,C67,D5 |
Chr1:58410362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B107,B16,B5 |
Chr1:58410364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr1:58410374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B42,B7,C58,C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794337.1PF00004
AAA 25-143 aa
PF07728
AAA_5 26-75 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794337.1 |
Pfam | PF00004 |
AAA | Domain | 25 | 143 | 3.1e-11 | 44.6 | ATPase family associated with various cellular activities (AAA) |
XP_057794337.1 |
Pfam | PF07728 |
AAA_5 | Domain | 26 | 75 | 7.7e-05 | 23.4 | AAA domain (dynein-related subfamily) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。