当前解析结果
SmilChr02G003744| 统一新 Gene ID | SmilChr02G003744 |
|---|---|
| 名称 | SmilChr02G003744 |
| 描述 | GPN-loop GTPase QQT1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 59093265 - 59098414 / + |
| NCBI Gene ID | LOC131010697 |
|---|---|
| GeneID | 131010697 |
| locus_tag | - |
| NCBI Name | LOC131010697 |
| 原始查询 | LOC131010697 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GPN-loop GTPase QQT1 |
| 产物 | GPN-loop GTPase QQT1 |
| Arabidopsis | AT5G22370 (QQT1)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832298] identity=82.9; qcov=0.961; evalue=0; confidence=high |
| Rice | Os02g0555000- identity=86.8; qcov=0.952; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF03029 (ATP_bind_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010697 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057794343.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057794343.1 |
| 3 | Midbody | Midbody | 0.80000 | XP_057794343.1 |
| 4 | Cytosol | 细胞质基质 | 0.60000 | XP_057794343.1 |
| 5 | Nucleoplasm | 核质 | 0.20000 | XP_057794343.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:59094003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr2:59094018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B98,D7 |
Chr2:59094028 |
CT |
C |
1bp_deletion | frameshift_variant | 110 | A14,A15,A16,A19,A21,A22,A23,A24,A25,A5,A6,A7,A8,B10,B100,B104,B108,B112,B113,B114,B12,B126,B128,B129,B132,B133,B134,B139,B15,B16,B2,B26,B29,B3,B30,B31,B38,B39,B41,B42,B43,B44,B45,B48,B49,B50,B54,B57,B58,B60,B61,B62,B63,B65,B67,B69,B7,B72,B73,B74,B78,B79,B8,B86,B88,B89,B9,B93,B94,B95,B97,C10,C11,C12,C13,C14,C15,C19,C20,C23,C24,C26,C27,C29,C30,C4,C41,C49,C5,C50,C51,C54,C56,C58,C59,C6,C60,C61,C64,C65,C66,C69,C70,C71,C74,C78,C84,D11,D5,D7 |
Chr2:59094030 |
T |
TA |
1bp_insertion | frameshift_variant | 106 | A14,A15,A16,A19,A21,A22,A24,A25,A5,A6,A7,A8,B10,B100,B104,B108,B112,B114,B12,B126,B128,B129,B132,B133,B134,B139,B15,B16,B2,B26,B29,B30,B31,B38,B39,B41,B42,B43,B44,B45,B48,B49,B50,B54,B57,B58,B60,B61,B62,B63,B65,B67,B69,B7,B72,B73,B74,B78,B79,B8,B86,B88,B89,B9,B93,B94,B95,B97,C10,C11,C12,C13,C14,C15,C19,C20,C23,C24,C26,C27,C29,C30,C4,C41,C49,C5,C50,C51,C54,C56,C58,C59,C6,C60,C61,C64,C65,C69,C70,C71,C74,C78,C84,D11,D5,D7 |
Chr2:59094196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B40,B56,B96,D10 |
Chr2:59094922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B98,D7 |
Chr2:59095371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,B102 |
Chr2:59095378 |
T |
TTA |
2bp_insertion | frameshift_variant | 1 | C72 |
Chr2:59095378 |
T |
TTA |
2bp_insertion | CDS_variant | 1 | C72 |
Chr2:59097353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B7,B91,C87,D2 |
Chr2:59097389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B18,B24,B33,C48 |
Chr2:59097522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794343.1PF03029
ATP_bind_1 7-255 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794343.1 |
Pfam | PF03029 |
ATP_bind_1 | Domain | 7 | 255 | 7.9e-79 | 265.6 | Conserved hypothetical ATP binding protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。