Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003757

染色体: Chr02 坐标: 59219112-59222336 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003757
名称SmilChr02G003757
描述mitochondrial outer membrane protein porin 2-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向59219112 - 59222336 / -

ID 对照

NCBI Gene IDLOC131010701
GeneID131010701
locus_tag-
NCBI NameLOC131010701
原始查询LOC131010701

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述mitochondrial outer membrane protein porin 2-like
产物mitochondrial outer membrane protein porin 2-like
ArabidopsisAT5G67500 (VDAC2)
voltage dependent anion channel 2 [Source:NCBI gene (formerly Entrezgene);Acc:836886]
identity=55.7; qcov=0.993; evalue=3.68e-112; confidence=high
RiceOs03g0202200 (OSVDAC4)
-
identity=53.5; qcov=1; evalue=1.45e-105; confidence=high
GOGO:0005741 (mitochondrial outer membrane); GO:0008308 (voltage-gated monoatomic anion channel activity); GO:0098656 (monoatomic anion transmembrane transport)
KEGG-
PfamPF01459 (Porin_3)
InterPro-
eggNOG-
NRGeneID:131010701

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057794345.1
2 Mitochondrion outer membrane 线粒体外膜 1.00000 XP_057794346.1
3 Mitochondrion membrane 线粒体膜 0.80000 XP_057794345.1
4 Chloroplast membrane 叶绿体膜 0.20000 XP_057794345.1
5 Nucleus 细胞核 0.00000 XP_057794345.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:59220268 C T EMS_canonical_SNV CDS_variant 3 B101,B56,B96
Chr2:59220690 G A EMS_canonical_SNV CDS_variant 1 B47
Chr2:59222034 G A EMS_canonical_SNV CDS_variant 1 B47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057794345.1
283 aa
N
1
142
283
Porin_3
C
PF01459 Porin_3 3-276 aa
XP_057794346.1
275 aa
N
1
138
275
Porin_3
C
PF01459 Porin_3 3-268 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057794345.1 Pfam PF01459 Porin_3 Family 3 276 4.1e-57 194.4 Eukaryotic porin
XP_057794346.1 Pfam PF01459 Porin_3 Family 3 268 1.6e-61 208.8 Eukaryotic porin

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057938363.1
AATTGAATTGAATTGAAAAATATCAACAGTTAGAAAACGTAAGCAACAAACAAACAATTCACTATTTCAGTGTTTTCTTACCCGAAAAGCCAGAAAAGTAACCGTGCTGTTTATTTTCTTTTATTTGAGTAAAATAGAAAGATAAACCTCAGTTAAAAAACGGAAAGAGCAGCAATTTCACCCCGCGCCGCAGAATCTCCGGTTCTTATTTAGGGGTCGAGAATCTTCATCAGAATCTCAACAAGCACAATAAAATCGCT...
XM_057938362.1
GTAACCGTGCTGTTTATTTTCTTTTATTTGAGTAAAATAGAAAGATAAACCTCAGTTAAAAAACGGAAAGAGCAGCAATTTCACCCCGCGCCGCAGAATCTCCGGTTCTTATTTAGGGGTCGAGAATCTTCATCAGAATCTCAACAAGCACAATAAAATCGCTGCAGAAGATGACCGGACCCGGCCTCTTCTCCGACTTCGGCAACAAAGCTAAAGAAATTTTGTTTAAGGACTACAGCGATGATCAGAAGCTCATCATT...

CDS

2 records

下载 CDS FASTA
LOC131010701
ATGACCGGACCCGGCCTCTTCTCCGACTTCGGCAACAAAGCTAAAGAAATTTTGTTTAAGGACTACAGCGATGATCAGAAGCTCATCATTTCTAGCCAGAGTGATACTGGATTGGCCATAGGTTCGACTCTTGCGAAAAAGGGTGGGCTGTCCAGTGGAGATGTGGCTGCAAAATTCGCATTTAGAAATGGTGCAGTTGATGTGAAGTTTGACACTGAATCAAATATATCAACAACCCTTGTTTTGGCCGATATCTTGCC...
LOC131010701
ATGACCGGACCCGGCCTCTTCTCCGACTTCGGCAACAAAGCTAAAGAAATTTTGTTTAAGGACTACAGCGATGATCAGAAGCTCATCATTTCTAGCCAGAGTGATACTGGATTGGCCATAGGTTCGACTCTTGCGAAAAAGGGTGGGCTGTCCAGTGGAGATGTGGCTGCAAAATTCGCATTTAGAAATGGTGCAGTTGATGTGAAGTTTGACACTGAATCAAATGTATTTTCCTTTCTGCATACCCACATATCAACAAC...

Protein

2 records

下载 Protein FASTA
XP_057794345.1
MTGPGLFSDFGNKAKEILFKDYSDDQKLIISSQSDTGLAIGSTLAKKGGLSSGDVAAKFAFRNGAVDVKFDTESNVFSFLHTHISTTLVLADILPSCRTIASCKFPDYNSGKIEVQYLHDHASLTTAVGLSKSPAIDVSATIGTPSVAFGTEASYMVSSGNFAKYNTGFSLKTPNAVVSAILFDKGDAVRVSYLHYLDQLNKGAAVGEIARKFSTNENTLTVGCSYAVDPHTTVKAKLNNHGHLAALAQHELKPKSVLTI...
XP_057794346.1
MTGPGLFSDFGNKAKEILFKDYSDDQKLIISSQSDTGLAIGSTLAKKGGLSSGDVAAKFAFRNGAVDVKFDTESNISTTLVLADILPSCRTIASCKFPDYNSGKIEVQYLHDHASLTTAVGLSKSPAIDVSATIGTPSVAFGTEASYMVSSGNFAKYNTGFSLKTPNAVVSAILFDKGDAVRVSYLHYLDQLNKGAAVGEIARKFSTNENTLTVGCSYAVDPHTTVKAKLNNHGHLAALAQHELKPKSVLTISGSFDTLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器