当前解析结果
SmilChr02G003790| 统一新 Gene ID | SmilChr02G003790 |
|---|---|
| 名称 | SmilChr02G003790 |
| 描述 | cytochrome P450 81Q32-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 59550439 - 59552490 / - |
| NCBI Gene ID | LOC131010734 |
|---|---|
| GeneID | 131010734 |
| locus_tag | - |
| NCBI Name | LOC131010734 |
| 原始查询 | LOC131010734 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 81Q32-like |
| 产物 | cytochrome P450 81Q32-like |
| Arabidopsis | AT4G37360 (CYP81D2)cytochrome P450, family 81, subfamily D, polypeptide 2 [Source:NCBI gene (formerly Entrezgene);Acc:829890] identity=48.2; qcov=0.984; evalue=4.81e-171; confidence=high |
| Rice | Os12g0582666- identity=47.3; qcov=0.941; evalue=5.69e-152; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010734 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057794378.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057794378.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057794378.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794378.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794378.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:59550797 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr2:59550848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr2:59551081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A25,C56,C58,C65 |
Chr2:59551090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr2:59551225 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C50 |
Chr2:59551225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr2:59551437 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | B112 |
Chr2:59551437 |
T |
TC |
1bp_insertion | CDS_variant | 1 | B112 |
Chr2:59551519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr2:59551653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr2:59551666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr2:59551737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B59,B87,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794378.1PF00067
p450 35-490 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794378.1 |
Pfam | PF00067 |
p450 | Domain | 35 | 490 | 3.9e-98 | 329.9 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。