当前解析结果
SmilChr02G003795| 统一新 Gene ID | SmilChr02G003795 |
|---|---|
| 名称 | SmilChr02G003795 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 59592143 - 59597020 / - |
| NCBI Gene ID | LOC131010739 |
|---|---|
| GeneID | 131010739 |
| locus_tag | - |
| NCBI Name | LOC131010739 |
| 原始查询 | LOC131010739 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=38.3; qcov=0.66; evalue=3.76e-132; confidence=medium |
| Rice | Os07g0615900- identity=45.8; qcov=0.656; evalue=0; confidence=high |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010739 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057794383.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057794383.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057794383.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057794383.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057794383.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:59593496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr2:59593831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B64,C24,C42,C6 |
Chr2:59593837 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:59593876 |
CT |
C |
1bp_deletion | frameshift_variant | 10 | A6,B140,B24,B31,B35,B52,B64,C24,C25,D9 |
Chr2:59593903 |
CTT |
C |
2bp_deletion | frameshift_variant | 1 | B124 |
Chr2:59593903 |
CTT |
C |
2bp_deletion | CDS_variant | 1 | B124 |
Chr2:59593998 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B35 |
Chr2:59593998 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B35 |
Chr2:59594319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,B47 |
Chr2:59594535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B129 |
Chr2:59594547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,B129 |
Chr2:59594627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794383.1PF03101
FAR1 64-149 aa
PF21056
ZSWIM1-3_RNaseH-like 237-354 aa
PF10551
MULE 272-366 aa
PF04434
SWIM 553-587 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794383.1 |
Pfam | PF03101 |
FAR1 | Domain | 64 | 149 | 1.2e-22 | 81.1 | FAR1 DNA-binding domain |
XP_057794383.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 237 | 354 | 9e-15 | 55.4 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057794383.1 |
Pfam | PF10551 |
MULE | Domain | 272 | 366 | 9.2e-30 | 103.6 | MULE transposase domain |
XP_057794383.1 |
Pfam | PF04434 |
SWIM | Domain | 553 | 587 | 2.1e-07 | 31.0 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。