Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003820`

染色体: Chr02 坐标: 59818507-59821088 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003820`
名称	SmilChr02G003820
描述	putative cyclin-A3-1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	59818507 - 59821088 / `+`

ID 对照

NCBI Gene ID	`LOC131010761`
GeneID	`131010761`
locus_tag	`-`
NCBI Name	`LOC131010761`
原始查询	`LOC131010761`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative cyclin-A3-1
产物	putative cyclin-A3-1
Arabidopsis	`AT1G47230` (CYCA3;4) CYCLIN A3;4 [Source:NCBI gene (formerly Entrezgene);Acc:841126] identity=56.9; qcov=1.02; evalue=3.31e-149; confidence=high
Rice	`Os12g0581800` (CycA3) - identity=63.3; qcov=0.772; evalue=6.27e-120; confidence=high
GO	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition)
KEGG	-
Pfam	PF00134 (Cyclin_N); PF02984 (Cyclin_C)
InterPro	-
eggNOG	-
NR	GeneID:131010761

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794410.1`
2	Chromosome	染色体	0.00000	`XP_057794410.1`
3	Centromere	着丝粒	0.00000	`XP_057794410.1`
4	Chromatin	染色质	0.00000	`XP_057794410.1`
5	Telomere	端粒	0.00000	`XP_057794410.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:59818851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B127,B99,C61
`Chr2:59818854`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C73
`Chr2:59818854`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr2:59818862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr2:59818865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B97,C18,C25,C9,D10
`Chr2:59818888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C18,C39
`Chr2:59818900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B34,C43,C63
`Chr2:59818912`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr2:59818946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr2:59818950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B7,C7,C83
`Chr2:59818985`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B9,C14
`Chr2:59819021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794410.1

356 aa

178

356

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 90-218 aa PF02984 Cyclin_C 221-344 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794410.1`	Pfam	`PF00134`	Cyclin_N	Domain	90	218	3.6e-47	159.9	Cyclin, N-terminal domain
`XP_057794410.1`	Pfam	`PF02984`	Cyclin_C	Domain	221	344	2.9e-37	128.0	Cyclin, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938427.1
AACAAACCCAAAACTTAAAGAACCGGGAAACTCATGGCCCTCCAATCCCAAAATCCCTAAATTTCAAAATCGGTCAAAATTTATCGCTCTTGATTTTGATTACCAAAAATTAAACCCAAAACCCCTCTTCATTTTCAATTTCAAGATTTCGTGGCGCCCTCAATTTTTTTGAAAACACAACAATGGCGGCATTATTCGCTTATAATCTCATTTCCATCTCCTATTTGCTGCAACCCCTTCTTCTCCACACGCCACTCTCA...

CDS

1 records

下载 CDS FASTA

LOC131010761
ATGGCGGAACAAGAAAACTGCGTTAGAGTCACCCGCTTGGCGGCGAGGAAGAGAGCTGCGGAGGAGACGCTGCAGCGGAGCACGAACAAGAGAGTGGTATTGGGTGAGATTCAGAACGTTCTAGGTTTGGATGGAAAGTCGAATGGGGTTGATAAGAAGAAAACGAAGCCCAAGACCAAGAGGAATGTCAGGAAAGGGGAAAAGGCTTTTGACTCCAATGTGGAAGAAAAATCTGATGACCCGCAGATGTGTGCAACCTA...

Protein

1 records

下载 Protein FASTA

XP_057794410.1
MAEQENCVRVTRLAARKRAAEETLQRSTNKRVVLGEIQNVLGLDGKSNGVDKKKTKPKTKRNVRKGEKAFDSNVEEKSDDPQMCATYASDIYQYLHKMEKEPSRRPSLDYIEKVQRDVSANMRGILVDWLVEVAEEYRLQSDTLYLTVSYIDRFLSANVITRQRLQLLGVSSMLIACKYEEINPAHVEDFCYITDNTYTREEVMKMESDVLTSLKFEMGSPTTKTFLRRFTRIAQGDDESYNLELEFLGCYLAELSLLDY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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