当前解析结果
SmilChr02G003917| 统一新 Gene ID | SmilChr02G003917 |
|---|---|
| 名称 | SmilChr02G003917 |
| 描述 | uncharacterized SmilChr02G003917 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 61252577 - 61254966 / - |
| NCBI Gene ID | LOC131010859 |
|---|---|
| GeneID | 131010859 |
| locus_tag | - |
| NCBI Name | LOC131010859 |
| 原始查询 | LOC131010859 |
| 来源 | GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829473]; symbol=FLDH; hit=AT4G33360; species=arabidopsis; confidence=high |
| 产物 | NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829473]; symbol=FLDH; hit=AT4G33360; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G33360 (FLDH)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829473] identity=66; qcov=0.987; evalue=1.74e-148; confidence=high |
| Rice | Os03g0184550 (OSJNBa0032G08.1)- identity=60.2; qcov=0.987; evalue=2.2e-129; confidence=high |
| GO | - |
| KEGG | smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010859 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057794522.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057794521.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057794522.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057794521.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057794521.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:61253234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B56,B96,C51 |
Chr2:61253381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr2:61254233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:61254559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,B130,B131,C62,C7 |
Chr2:61254570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:61254572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr2:61254573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B29,B53,B54,B71 |
Chr2:61254597 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr2:61254608 |
G |
GGA |
2bp_insertion | frameshift_variant | 11 | B39,B52,B53,B58,B86,C13,C2,C54,C63,C72,D11 |
Chr2:61254612 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | B101,C24,C42,C46 |
Chr2:61254612 |
G |
GA |
1bp_insertion | CDS_variant | 4 | B101,C24,C42,C46 |
Chr2:61254620 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B101,C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794521.1PF05368
NmrA 1-126 aa
PF02719
Polysacc_synt_2 5-125 aa
PF01370
Epimerase 5-240 aa
PF01073
3Beta_HSD 6-233 aa
PF16363
GDP_Man_Dehyd 6-258 aa
PF13460
NAD_binding_10 9-136 aa
PF07993
NAD_binding_4 74-225 aa
XP_057794522.1PF05368
NmrA 1-127 aa
PF02719
Polysacc_synt_2 5-125 aa
PF01370
Epimerase 5-240 aa
PF01073
3Beta_HSD 6-233 aa
PF16363
GDP_Man_Dehyd 6-258 aa
PF13460
NAD_binding_10 9-136 aa
PF07993
NAD_binding_4 74-225 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794521.1 |
Pfam | PF05368 |
NmrA | Family | 1 | 126 | 2.9e-10 | 41.0 | NmrA-like family |
XP_057794521.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 5 | 125 | 1.3e-07 | 31.9 | Polysaccharide biosynthesis protein |
XP_057794521.1 |
Pfam | PF01370 |
Epimerase | Family | 5 | 240 | 1.9e-30 | 106.8 | NAD dependent epimerase/dehydratase family |
XP_057794521.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 6 | 233 | 9.2e-23 | 81.4 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057794521.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 6 | 258 | 5.6e-18 | 66.2 | GDP-mannose 4,6 dehydratase |
XP_057794521.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 9 | 136 | 2.5e-11 | 44.5 | NAD(P)H-binding |
XP_057794521.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 74 | 225 | 7.5e-15 | 55.5 | Male sterility protein |
XP_057794522.1 |
Pfam | PF05368 |
NmrA | Family | 1 | 127 | 2.1e-10 | 41.4 | NmrA-like family |
XP_057794522.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 5 | 125 | 8.4e-08 | 32.5 | Polysaccharide biosynthesis protein |
XP_057794522.1 |
Pfam | PF01370 |
Epimerase | Family | 5 | 240 | 1.3e-30 | 107.3 | NAD dependent epimerase/dehydratase family |
XP_057794522.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 6 | 233 | 6e-23 | 82.0 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057794522.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 6 | 258 | 6.8e-17 | 62.6 | GDP-mannose 4,6 dehydratase |
XP_057794522.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 9 | 136 | 1.8e-11 | 45.0 | NAD(P)H-binding |
XP_057794522.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 74 | 225 | 4.4e-15 | 56.2 | Male sterility protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。