Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003918`

染色体: Chr02 坐标: 61266207-61272189 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003918`
名称	SmilChr02G003918
描述	uncharacterized SmilChr02G003918
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	61266207 - 61272189 / `-`

ID 对照

NCBI Gene ID	`LOC131010860`
GeneID	`131010860`
locus_tag	`-`
NCBI Name	`LOC131010860`
原始查询	`LOC131010860`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53) [Source:NCBI gene (formerly Entrezgene);Acc:834448]; symbol=AT5G44250; hit=AT5G44250; species=arabidopsis; confidence=high
产物	peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53) [Source:NCBI gene (formerly Entrezgene);Acc:834448]; symbol=AT5G44250; hit=AT5G44250; species=arabidopsis; confidence=high
Arabidopsis	`AT5G44250` (AT5G44250) peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53) [Source:NCBI gene (formerly Entrezgene);Acc:834448] identity=52.2; qcov=1.05; evalue=6.78e-148; confidence=high
Rice	`Os06g0213400` - identity=44.5; qcov=1.05; evalue=9.07e-108; confidence=medium
GO	-
KEGG	-
Pfam	PF05705 (DUF829)
InterPro	-
eggNOG	-
NR	GeneID:131010860

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast membrane	叶绿体膜	0.80000	`XP_057794524.1`
2	Chloroplast	叶绿体	0.60000	`XP_057794524.1`
3	Nucleus	细胞核	0.00000	`XP_057794524.1`
4	Chromosome	染色体	0.00000	`XP_057794524.1`
5	Centromere	着丝粒	0.00000	`XP_057794524.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:61268561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr2:61268567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:61268592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:61268617`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,B63,B69,C28
`Chr2:61268653`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,C62
`Chr2:61268670`	`T`	`TG`	1bp_insertion	frameshift_variant	9	A24,A25,B102,B126,B20,B44,C18,C40,C42
`Chr2:61268773`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr2:61268831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr2:61268843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr2:61268857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,C53,C78
`Chr2:61268906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr2:61269158`	`TC`	`T`	1bp_deletion	frameshift_variant	9	A24,A25,B102,B126,B20,B44,C18,C40,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794524.1

390 aa

195

390

DUF829

PF05705 DUF829 21-138 aa PF05705 DUF829 153-209 aa PF05705 DUF829 202-260 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794524.1`	Pfam	`PF05705`	DUF829	Domain	21	138	6.3e-37	128.4	Eukaryotic protein of unknown function (DUF829)
`XP_057794524.1`	Pfam	`PF05705`	DUF829	Domain	153	209	6.3e-37	128.4	Eukaryotic protein of unknown function (DUF829)
`XP_057794524.1`	Pfam	`PF05705`	DUF829	Domain	202	260	6.3e-37	128.4	Eukaryotic protein of unknown function (DUF829)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938541.1
AAATCTTGGTAATTAAGTTCAACCCCATCAAATTATCTTTGAGCCCAGCCAAAAACCTCTTCAACTTTGCAATATTCCGCTCTCATTTTTCGAGGAAGCCTTAAAATCCTAACTTTGTGGGAATAGTTTGGAGGATGTGGGGATTAGGTGGAAGTTATTATTGGCGAAGAAAGGAGAGGGGGAAAGTGGAAGGAATAGTTGTGGTATTTGCATGGATGTCGAGTCAGGAGAAGCATTTGAATAATTATGTTGACGTCTAC...

CDS

1 records

下载 CDS FASTA

LOC131010860
ATGTGGGGATTAGGTGGAAGTTATTATTGGCGAAGAAAGGAGAGGGGGAAAGTGGAAGGAATAGTTGTGGTATTTGCATGGATGTCGAGTCAGGAGAAGCATTTGAATAATTATGTTGACGTCTACTCCTCTCTCGGCTGGAATTCCATTGTTTGCCAACCTAAAATCCTCAATTTATTTTTTCCTGATAAGGCTGCATCGTTAGCTCAGGAAATAGTTAACGAGCTCATTCAGGAATTAAAAATAAGGCCATGCCCCAT...

Protein

1 records

下载 Protein FASTA

XP_057794524.1
MWGLGGSYYWRRKERGKVEGIVVVFAWMSSQEKHLNNYVDVYSSLGWNSIVCQPKILNLFFPDKAASLAQEIVNELIQELKIRPCPIIFASFSGGPKACMYKVLQIIEGKHEEQINQDECRLVRDSISGYIFDSCPVDFVSDLGKRFILHQTGFKISRPPLVASWITSGISSTMEALFLSRLESQRAEYWQTLYSTVSFRAPYLILCSEDDELAPFQIIFNFASRLKNLGADVKLVKWNKSSHVGHFRHHPEEYSAAVTE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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