Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003978`

染色体: Chr02 坐标: 62036835-62048554 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003978`
名称	SmilChr02G003978
描述	probable beta-D-xylosidase 7
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62036835 - 62048554 / `+`

ID 对照

NCBI Gene ID	`LOC131010870`
GeneID	`131010870`
locus_tag	`-`
NCBI Name	`LOC131010870`
原始查询	`LOC131010870`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable beta-D-xylosidase 7
产物	probable beta-D-xylosidase 7
Arabidopsis	`AT1G78060` (AT1G78060) Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844141] identity=61.6; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0752200` - identity=59.3; qcov=1.01; evalue=0; confidence=high
GO	GO:0009044 (xylan 1,4-beta-xylosidase activity); GO:0009505 (plant-type cell wall); GO:0031222 (arabinan catabolic process); GO:0045493 (xylan catabolic process); GO:0046556 (alpha-L-arabinofuranosidase activity)
KEGG	-
Pfam	PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C); PF14310 (Fn3-like)
InterPro	-
eggNOG	-
NR	GeneID:131010870

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057794541.1`
2	Nucleus	细胞核	0.00000	`XP_057794541.1`
3	Chromosome	染色体	0.00000	`XP_057794541.1`
4	Centromere	着丝粒	0.00000	`XP_057794541.1`
5	Chromatin	染色质	0.00000	`XP_057794541.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62036963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr2:62037133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B95,C14
`Chr2:62037141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr2:62037181`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B95,C14,C71
`Chr2:62037247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:62038379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr2:62038475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr2:62038476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr2:62038530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr2:62045695`	`CAG`	`C`	2bp_deletion	frameshift_variant	1	D11
`Chr2:62045695`	`CAG`	`C`	2bp_deletion	CDS_variant	1	D11
`Chr2:62046004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794541.1

781 aa

390

781

Glyco_hydro_3

Glyco_hydro_3_C

Fn3-like

PF00933 Glyco_hydro_3 108-359 aa PF01915 Glyco_hydro_3_C 403-632 aa PF14310 Fn3-like 706-769 aa

XP_057794542.1

637 aa

318

637

Glyco_hydro_3

Glyco_hydro_3_C

Fn3-like

PF00933 Glyco_hydro_3 13-215 aa PF01915 Glyco_hydro_3_C 259-488 aa PF14310 Fn3-like 562-625 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794541.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	108	359	5.9e-34	118.6	Glycosyl hydrolase family 3 N terminal domain
`XP_057794541.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	403	632	2.9e-50	171.7	Glycosyl hydrolase family 3 C-terminal domain
`XP_057794541.1`	Pfam	`PF14310`	Fn3-like	Family	706	769	1.5e-08	35.3	Fibronectin type III-like domain
`XP_057794542.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	13	215	6.1e-30	105.5	Glycosyl hydrolase family 3 N terminal domain
`XP_057794542.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	259	488	2e-50	172.3	Glycosyl hydrolase family 3 C-terminal domain
`XP_057794542.1`	Pfam	`PF14310`	Fn3-like	Family	562	625	1.1e-08	35.8	Fibronectin type III-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938558.1
CAAGACTGCAAATATATTCATTTGATATCTACTTTATCTTTCCCTCGTATCCTTACTCACTAACAATGGAGCTCCATTTCTATTTCCGCGGCGGACTCCTCCTCGCCCTCGCCCTCCTCCTCATCCCGCGCGGCGGCGATTCAACTCAGCCGCCGTTCTCGTGCGATTCAGCCGATCCAAAAACAAAATCATTCAAGTTCTGCCAGAAATCTCTGCCGATTGCGCAGCGAGCTCGCGACCTCGTTTCGCGGTTAACATTG...

XM_057938559.1
GGTCGGAGGCGCTGCACGGCGTCTCCGGCTATGGCCGCGGCGTCACTTACGGCGGCGCAATCGGCGGCGCCACCAGCTTCCCCCAAGTTATCCTCTCCGCCTCCACCTTCGATTCCCGGCTTTGGTACCGCATTGGCCAGTGTAGGCAATTGGGAGAGAGGCAAGAGGCATGTACAATGGAGGGCAAGCGCAAGGTATGACATTTTGGACACCAAACATAAACATATTTAGAGATCCACGGTGGGGGAGAGGGCAGGAGA...

CDS

2 records

下载 CDS FASTA

LOC131010870
ATGGAGCTCCATTTCTATTTCCGCGGCGGACTCCTCCTCGCCCTCGCCCTCCTCCTCATCCCGCGCGGCGGCGATTCAACTCAGCCGCCGTTCTCGTGCGATTCAGCCGATCCAAAAACAAAATCATTCAAGTTCTGCCAGAAATCTCTGCCGATTGCGCAGCGAGCTCGCGACCTCGTTTCGCGGTTAACATTGGACGAGAAGATCTCGCAACTGGTCGACTCGTCCGCCGCCATACCACGGCTCGGCGTCCCCGCCTA...

LOC131010870
ATGTACAATGGAGGGCAAGCGCAAGGTATGACATTTTGGACACCAAACATAAACATATTTAGAGATCCACGGTGGGGGAGAGGGCAGGAGACACCTGGCGAAGATCCAATGGTCGCCGCAAAATACGCCGTGGCGCATGTTAGAGGTATCCAGGGTGATAGATACGAAGGGGGGCAAAATGGTCATCTCCTTGCATCCGCTTGCTGTAAACACTTTACTGCCTACGATTTGGACAACTGGAAGAGTGTTAGTCGCATGGG...

Protein

2 records

下载 Protein FASTA

XP_057794541.1
MELHFYFRGGLLLALALLLIPRGGDSTQPPFSCDSADPKTKSFKFCQKSLPIAQRARDLVSRLTLDEKISQLVDSSAAIPRLGVPAYQWWSEALHGVSGYGRGVTYGGAIGGATSFPQVILSASTFDSRLWYRIGQAIGREARGMYNGGQAQGMTFWTPNINIFRDPRWGRGQETPGEDPMVAAKYAVAHVRGIQGDRYEGGQNGHLLASACCKHFTAYDLDNWKSVSRMGFDAKVTQQDLADTYQPPFRSCVQEGKASG...

XP_057794542.1
MYNGGQAQGMTFWTPNINIFRDPRWGRGQETPGEDPMVAAKYAVAHVRGIQGDRYEGGQNGHLLASACCKHFTAYDLDNWKSVSRMGFDAKVTQQDLADTYQPPFRSCVQEGKASGIMCAYNSVNGVPNCADRNLLTKTARGQWGFHGYIVSDCDAVATIYEKHKYVRKPEDAVALALKAGMDVNCGSYLKDYTKSAIQQQKVRESQVDRALNNLFEVRMRLGLFDGNPSRNLFGNIGRADVCSQAHQDLALEAARNGIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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