Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003943`

染色体: Chr02 坐标: 61576773-61582490 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003943`
名称	SmilChr02G003943
描述	probable pectin methyltransferase QUA2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	61576773 - 61582490 / `+`

ID 对照

NCBI Gene ID	`LOC131010874`
GeneID	`131010874`
locus_tag	`-`
NCBI Name	`LOC131010874`
原始查询	`LOC131010874`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable pectin methyltransferase QUA2
产物	probable pectin methyltransferase QUA2
Arabidopsis	`AT1G78240` (TSD2) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844160] identity=64.3; qcov=1; evalue=0; confidence=high
Rice	`Os02g0755000` (OsTSD2) - identity=63.8; qcov=0.818; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0008168 (methyltransferase activity)
KEGG	-
Pfam	PF03141 (Methyltransf_29)
InterPro	-
eggNOG	-
NR	GeneID:131010874

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057794546.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057794546.1`
3	Nucleus	细胞核	0.00000	`XP_057794546.1`
4	Chromosome	染色体	0.00000	`XP_057794546.1`
5	Centromere	着丝粒	0.00000	`XP_057794546.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:61577839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B4,D3
`Chr2:61577965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr2:61578254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr2:61578378`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr2:61578513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:61579283`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr2:61580994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:61581063`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:61581229`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B117,C27,C3,C53
`Chr2:61581273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr2:61581501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr2:61581538`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794546.1

699 aa

350

699

Methyltransf_29

PF03141 Methyltransf_29 168-691 aa

XP_057794547.1

699 aa

350

699

Methyltransf_29

PF03141 Methyltransf_29 168-691 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794546.1`	Pfam	`PF03141`	Methyltransf_29	Family	168	691	2.6e-135	452.6	Putative S-adenosyl-L-methionine-dependent methyltransferase
`XP_057794547.1`	Pfam	`PF03141`	Methyltransf_29	Family	168	691	2.6e-135	452.6	Putative S-adenosyl-L-methionine-dependent methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938564.1
ATTCAATTAAAAATGATAAAAGCTCGACAAAGTGAAAAATAAATTTAACTCAAATACAATTGTCGACATTTAGATAAGAAATCATACGAACCTCGACATTAATGAGAGAGAGAGAGAGAGAGAGATCTTAACCGAGCCACCTCTGATAAGATTGGATCCCACTCCGCAGTAGAATTTCTTCACAGTCCCACCAATTTGTATGCATATATATATAACCCCTTTCCACCTCGTTGCAATCTCTCCTTCATCTCTGCTCTCTA...

XM_057938563.1
AAATACAATTGTCGACATTTAGATAAGAAATCATACGAACCTCGACATTAATGAGAGAGAGAGAGAGAGAGAGATCTTAACCGAGCCACCTCTGATAAGATTGGATCCCACTCCGCAGTAGAATTTCTTCACAGTCCCACCAATTTGTATGCATATATATATAACCCCTTTCCACCTCGTTGCAATCTCTCCTTCATCTCTGCTCTCTAGCTGGAATTTCCTGCTCCCATTCAGTAATGTGATCTGAAGCTAAGTGTGAA...

CDS

2 records

下载 CDS FASTA

LOC131010874
ATGTCGAGGCCTCTTCACAGGGGTGTATTGAGTGGCGGTGGGCGAGTCTCGGGGAATAGTCATGATTATTGGGAGGATTCTCAGAAGAAAGATAGGTTGGAGAAGGAAGATGTGAAAATTCAGCCAAATGGAGCTGATGCCACACACCATTTGTCTTTGAAAAACCCTTTTCGCTTTCTTTTCACAAATAATCATCCGTCTTCGACTCACAATTTGGGGGAGCACGGCTTTGTATCGGACCCCTTCAGTCCAGGGGTTGT...

Protein

2 records

下载 Protein FASTA

XP_057794546.1
MSRPLHRGVLSGGGRVSGNSHDYWEDSQKKDRLEKEDVKIQPNGADATHHLSLKNPFRFLFTNNHPSSTHNLGEHGFVSDPFSPGVVRSWQKVILSFIKFSLVVIVILALTGSYWWSLSIASTSRGQVFHGYRRLQEQLVSDMYEIGELSLSSSRFRELEYCSQESENYVPCFNVSENLALGFTGGEEYGRHCVHGLKHNCLVLPPVNYRIPLRWPAGKDIIWFANVNITAQEVLSSGSLTKRMMMLDEDQISFRSVSST...

XP_057794547.1
MSRPLHRGVLSGGGRVSGNSHDYWEDSQKKDRLEKEDVKIQPNGADATHHLSLKNPFRFLFTNNHPSSTHNLGEHGFVSDPFSPGVVRSWQKVILSFIKFSLVVIVILALTGSYWWSLSIASTSRGQVFHGYRRLQEQLVSDMYEIGELSLSSSRFRELEYCSQESENYVPCFNVSENLALGFTGGEEYGRHCVHGLKHNCLVLPPVNYRIPLRWPAGKDIIWFANVNITAQEVLSSGSLTKRMMMLDEDQISFRSVSST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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