当前解析结果
SmilChr02G003955| 统一新 Gene ID | SmilChr02G003955 |
|---|---|
| 名称 | SmilChr02G003955 |
| 描述 | uncharacterized SmilChr02G003955 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 61704822 - 61709869 / - |
| NCBI Gene ID | LOC131010881 |
|---|---|
| GeneID | 131010881 |
| locus_tag | - |
| NCBI Name | LOC131010881 |
| 原始查询 | LOC131010881 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844149]; symbol=UNE2; hit=AT1G78130; species=arabidopsis; confidence=high |
| 产物 | Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844149]; symbol=UNE2; hit=AT1G78130; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G78130 (UNE2)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844149] identity=74.2; qcov=0.989; evalue=0; confidence=high |
| Rice | Os08g0409900- identity=65.6; qcov=0.984; evalue=8.62e-161; confidence=high |
| GO | GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010881 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057794554.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057794554.1 |
| 3 | Secretory vesicle | Secretory vesicle | 0.40000 | XP_057794560.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057794560.1 |
| 5 | Mitochondrion | 线粒体 | 0.20000 | XP_057794560.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:61705403 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr2:61705443 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr2:61705471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B8,C15,C36,C77 |
Chr2:61705495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B8,C15,C36,C77 |
Chr2:61705585 |
CTA |
C |
2bp_deletion | frameshift_variant | 4 | B110,B57,B88,C51 |
Chr2:61705585 |
CTA |
C |
2bp_deletion | CDS_variant | 4 | B110,B57,B88,C51 |
Chr2:61705602 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr2:61705713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr2:61706188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr2:61706240 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B78 |
Chr2:61706240 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B78 |
Chr2:61706353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794554.1PF07690
MFS_1 13-378 aa
PF00083
Sugar_tr 51-185 aa
XP_057794555.1PF07690
MFS_1 13-378 aa
PF00083
Sugar_tr 51-185 aa
XP_057794556.1PF07690
MFS_1 13-378 aa
PF00083
Sugar_tr 51-185 aa
XP_057794557.1PF07690
MFS_1 13-378 aa
PF00083
Sugar_tr 51-185 aa
XP_057794558.1PF07690
MFS_1 13-378 aa
PF00083
Sugar_tr 51-185 aa
XP_057794559.1PF07690
MFS_1 13-378 aa
PF00083
Sugar_tr 51-185 aa
XP_057794560.1PF07690
MFS_1 13-346 aa
PF00083
Sugar_tr 51-185 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794554.1 |
Pfam | PF07690 |
MFS_1 | Family | 13 | 378 | 8.9e-49 | 167.0 | Major Facilitator Superfamily |
XP_057794554.1 |
Pfam | PF00083 |
Sugar_tr | Family | 51 | 185 | 7.4e-06 | 25.8 | Sugar (and other) transporter |
XP_057794555.1 |
Pfam | PF07690 |
MFS_1 | Family | 13 | 378 | 8.9e-49 | 167.0 | Major Facilitator Superfamily |
XP_057794555.1 |
Pfam | PF00083 |
Sugar_tr | Family | 51 | 185 | 7.4e-06 | 25.8 | Sugar (and other) transporter |
XP_057794556.1 |
Pfam | PF07690 |
MFS_1 | Family | 13 | 378 | 8.9e-49 | 167.0 | Major Facilitator Superfamily |
XP_057794556.1 |
Pfam | PF00083 |
Sugar_tr | Family | 51 | 185 | 7.4e-06 | 25.8 | Sugar (and other) transporter |
XP_057794557.1 |
Pfam | PF07690 |
MFS_1 | Family | 13 | 378 | 8.9e-49 | 167.0 | Major Facilitator Superfamily |
XP_057794557.1 |
Pfam | PF00083 |
Sugar_tr | Family | 51 | 185 | 7.4e-06 | 25.8 | Sugar (and other) transporter |
XP_057794558.1 |
Pfam | PF07690 |
MFS_1 | Family | 13 | 378 | 8.9e-49 | 167.0 | Major Facilitator Superfamily |
XP_057794558.1 |
Pfam | PF00083 |
Sugar_tr | Family | 51 | 185 | 7.4e-06 | 25.8 | Sugar (and other) transporter |
XP_057794559.1 |
Pfam | PF07690 |
MFS_1 | Family | 13 | 378 | 8.9e-49 | 167.0 | Major Facilitator Superfamily |
XP_057794559.1 |
Pfam | PF00083 |
Sugar_tr | Family | 51 | 185 | 7.4e-06 | 25.8 | Sugar (and other) transporter |
XP_057794560.1 |
Pfam | PF07690 |
MFS_1 | Family | 13 | 346 | 2.7e-42 | 145.6 | Major Facilitator Superfamily |
XP_057794560.1 |
Pfam | PF00083 |
Sugar_tr | Family | 51 | 185 | 3.5e-06 | 26.9 | Sugar (and other) transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
7 records
下载 cDNA FASTA7 records
下载 CDS FASTA7 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。