当前解析结果
SmilChr02G003961| 统一新 Gene ID | SmilChr02G003961 |
|---|---|
| 名称 | SmilChr02G003961 |
| 描述 | uncharacterized SmilChr02G003961 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 61777382 - 61778980 / - |
| NCBI Gene ID | LOC131010908 |
|---|---|
| GeneID | 131010908 |
| locus_tag | - |
| NCBI Name | LOC131010908 |
| 原始查询 | LOC131010908 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nucleolar GTP-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:844147]; symbol=AT1G78110; hit=AT1G78110; species=arabidopsis; confidence=medium |
| 产物 | nucleolar GTP-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:844147]; symbol=AT1G78110; hit=AT1G78110; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G78110 (AT1G78110)nucleolar GTP-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:844147] identity=44.8; qcov=1.2; evalue=8.48e-72; confidence=medium |
| Rice | Os02g0753400- identity=37.7; qcov=1.11; evalue=9.22e-42; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF30939 (At1g76070) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010908 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057794596.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057794596.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057794596.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794596.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794596.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:61777974 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B139,B78,B95,C14,D6 |
Chr2:61778044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:61778088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B109,B66,C18,C5 |
Chr2:61778126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr2:61778265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr2:61778329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr2:61778358 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B8,C15,C36,C77 |
Chr2:61778387 |
A |
AGG |
2bp_insertion | frameshift_variant | 48 | A14,A20,A24,A6,A7,B101,B108,B109,B12,B120,B127,B128,B133,B14,B18,B27,B34,B37,B4,B50,B59,B63,B64,B68,B7,B79,B91,B96,B99,C25,C28,C29,C32,C35,C36,C40,C43,C57,C6,C61,C64,C68,C75,C76,C83,D4,D5,D8 |
Chr2:61778393 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C64 |
Chr2:61778393 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C64 |
Chr2:61778396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr2:61778398 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794596.1PF30939
At1g76070 63-125 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794596.1 |
Pfam | PF30939 |
At1g76070 | Family | 63 | 125 | 2.3e-07 | 31.8 | Syringolide-induced protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。