当前解析结果
SmilChr02G003997| 统一新 Gene ID | SmilChr02G003997 |
|---|---|
| 名称 | SmilChr02G003997 |
| 描述 | uncharacterized SmilChr02G003997 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62291406 - 62296166 / + |
| NCBI Gene ID | LOC131010931 |
|---|---|
| GeneID | 131010931 |
| locus_tag | - |
| NCBI Name | LOC131010931 |
| 原始查询 | LOC131010931 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tRNA modification GTPase [Source:NCBI gene (formerly Entrezgene);Acc:844136]; symbol=AT1G78010; hit=AT1G78010; species=arabidopsis; confidence=high |
| 产物 | tRNA modification GTPase [Source:NCBI gene (formerly Entrezgene);Acc:844136]; symbol=AT1G78010; hit=AT1G78010; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G78010 (AT1G78010)tRNA modification GTPase [Source:NCBI gene (formerly Entrezgene);Acc:844136] identity=65.8; qcov=0.984; evalue=0; confidence=high |
| Rice | Os08g0407000 (P0453D01.14)- identity=70.8; qcov=0.853; evalue=0; confidence=high |
| GO | GO:0002098 (tRNA wobble uridine modification); GO:0003924 (GTPase activity); GO:0005515 (protein binding); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0030488 (tRNA methylation) |
| KEGG | - |
| Pfam | PF01926 (MMR_HSR1); PF02421 (FeoB_N); PF10396 (TrmE_N); PF12631 (MnmE_helical) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010931 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057794623.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057794623.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057794623.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057794623.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057794623.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62292756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:62292796 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B128 |
Chr2:62292796 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B128 |
Chr2:62292910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B62,B64,C12 |
Chr2:62293161 |
AGT |
A |
2bp_deletion | frameshift_variant | 1 | C61 |
Chr2:62293161 |
AGT |
A |
2bp_deletion | CDS_variant | 1 | C61 |
Chr2:62293959 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr2:62294528 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr2:62294542 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B130 |
Chr2:62294542 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B130 |
Chr2:62294567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B134,B83,C59,C9 |
Chr2:62294577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794623.1PF10396
TrmE_N 84-210 aa
PF12631
MnmE_helical 213-547 aa
PF01926
MMR_HSR1 307-428 aa
PF02421
FeoB_N 307-465 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794623.1 |
Pfam | PF10396 |
TrmE_N | Family | 84 | 210 | 3.8e-38 | 131.0 | GTP-binding protein TrmE N-terminus |
XP_057794623.1 |
Pfam | PF12631 |
MnmE_helical | Family | 213 | 547 | 2e-45 | 156.2 | MnmE helical domain |
XP_057794623.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 307 | 428 | 1.3e-24 | 87.1 | 50S ribosome-binding GTPase |
XP_057794623.1 |
Pfam | PF02421 |
FeoB_N | Domain | 307 | 465 | 1.2e-09 | 38.6 | Ferrous iron transport protein B |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。