当前解析结果
SmilChr02G003998| 统一新 Gene ID | SmilChr02G003998 |
|---|---|
| 名称 | SmilChr02G003998 |
| 描述 | somatic embryogenesis receptor kinase 2 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62303822 - 62309454 / - |
| NCBI Gene ID | LOC131010935 |
|---|---|
| GeneID | 131010935 |
| locus_tag | - |
| NCBI Name | LOC131010935 |
| 原始查询 | LOC131010935 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | somatic embryogenesis receptor kinase 2 |
| 产物 | somatic embryogenesis receptor kinase 2 |
| Arabidopsis | AT1G34210 (SERK2)somatic embryosis receptor-like kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:840320] identity=92.7; qcov=0.922; evalue=0; confidence=high |
| Rice | Os08g0174700 (BAK1)- identity=87.4; qcov=0.954; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010935 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057794628.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057794628.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057794628.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057794628.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057794628.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62304209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:62304256 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C82 |
Chr2:62304256 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C82 |
Chr2:62305814 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr2:62305822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:62305933 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:62305981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,B6 |
Chr2:62305999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C71 |
Chr2:62306016 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B130 |
Chr2:62306016 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B130 |
Chr2:62306104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:62306219 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794628.1PF08263
LRRNT_2 53-92 aa
PF00560
LRR_1 120-142 aa
PF00560
LRR_1 144-166 aa
PF00560
LRR_1 168-189 aa
PF00560
LRR_1 192-210 aa
PF00069
Pkinase 329-600 aa
PF07714
PK_Tyr_Ser-Thr 331-602 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794628.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 53 | 92 | 9.8e-11 | 42.5 | Leucine rich repeat N-terminal domain |
XP_057794628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 120 | 142 | 2.8e-13 | 47.9 | Leucine Rich Repeat |
XP_057794628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 144 | 166 | 2.8e-13 | 47.9 | Leucine Rich Repeat |
XP_057794628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 168 | 189 | 2.8e-13 | 47.9 | Leucine Rich Repeat |
XP_057794628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 192 | 210 | 2.8e-13 | 47.9 | Leucine Rich Repeat |
XP_057794628.1 |
Pfam | PF00069 |
Pkinase | Domain | 329 | 600 | 3e-43 | 148.9 | Protein kinase domain |
XP_057794628.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 331 | 602 | 2.5e-44 | 152.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。