Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004009`

染色体: Chr02 坐标: 62412995-62417878 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004009`
名称	SmilChr02G004009
描述	laccase-15-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62412995 - 62417878 / `+`

ID 对照

NCBI Gene ID	`LOC131010940`
GeneID	`131010940`
locus_tag	`-`
NCBI Name	`LOC131010940`
原始查询	`LOC131010940`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	laccase-15-like
产物	laccase-15-like
Arabidopsis	`AT5G09360` (LAC14) laccase 14 [Source:NCBI gene (formerly Entrezgene);Acc:830795] identity=52.3; qcov=1; evalue=0; confidence=high
Rice	`Os02g0749700` (OsLAC10) - identity=48.6; qcov=1.03; evalue=0; confidence=high
GO	GO:0005507 (copper ion binding); GO:0046274 (lignin catabolic process); GO:0048046 (apoplast); GO:0052716 (hydroquinone:oxygen oxidoreductase activity)
KEGG	-
Pfam	PF00394 (Cu-oxidase); PF07731 (Cu-oxidase_2); PF07732 (Cu-oxidase_3)
InterPro	-
eggNOG	-
NR	GeneID:131010940

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057794633.1`
2	Nucleus	细胞核	0.00000	`XP_057794633.1`
3	Chromosome	染色体	0.00000	`XP_057794633.1`
4	Centromere	着丝粒	0.00000	`XP_057794633.1`
5	Chromatin	染色质	0.00000	`XP_057794633.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62414272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:62416501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B84,C24,C85
`Chr2:62416504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B84,C24,C85
`Chr2:62416612`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr2:62416668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B8,C36,C77
`Chr2:62416762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B31,C25,C81
`Chr2:62416828`	`CTT`	`C`	2bp_deletion	frameshift_variant	174	A1,A10,A11,A13,A15,A19,A20,A21,A22,A23,A24,A25,A3,A4,A6,A8,B1,B101,B106,B107,B109,B11,B111,B112,B114,B115,B117,B118,B119,B120,B121,B124,B125,B127,B128,B129,B13,B130,B131,B132,B135,B139,B14,B17,B19,B21,B22,B23,B24,B26,B27,B29,B3,B31,B36,B37,B4,B40,B43,B45,B46,B49,B5,B50,B51,B52,B53,B54,B57,B58,B59,B6,B61,B62,B63,B65,B66,B67,B70,B71,B73,B74,B75,B8,B81,B82,B84,B86,B88,B89,B9,B90,B92,B93,B94,B96,B97,B98,B99,C1,C11,C12,C14,C17,C19,C2,C20,C21,C22,C24,C25,C27,C28,C29,C3,C31,C32,C33,C34,C35,C36,C38,C39,C4,C40,C41,C42,C44,C45,C46,C48,C5,C50,C51,C53,C54,C55,C56,C58,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C76,C77,C78,C79,C8,C80,C81,C82,C83,C85,C86,C87,D1,D10,D11,D2,D3,D4,D5,D8,D9
`Chr2:62416831`	`G`	`GGC`	2bp_insertion	frameshift_variant	174	A1,A10,A11,A13,A15,A19,A20,A21,A22,A23,A24,A25,A3,A4,A6,A8,B1,B101,B106,B107,B109,B11,B111,B112,B114,B115,B117,B118,B119,B120,B121,B124,B125,B127,B128,B129,B13,B130,B131,B132,B135,B139,B14,B17,B19,B21,B22,B23,B24,B26,B27,B29,B3,B31,B36,B37,B4,B40,B43,B45,B46,B49,B5,B50,B51,B52,B53,B54,B57,B58,B59,B6,B61,B62,B63,B65,B66,B67,B70,B71,B73,B74,B75,B8,B81,B82,B84,B86,B88,B89,B9,B90,B92,B93,B94,B96,B97,B98,B99,C1,C11,C12,C14,C17,C19,C2,C20,C21,C22,C24,C25,C27,C28,C29,C3,C31,C32,C33,C34,C35,C36,C38,C39,C4,C40,C41,C42,C44,C45,C46,C48,C5,C50,C51,C53,C54,C55,C56,C58,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C76,C77,C78,C79,C8,C80,C81,C82,C83,C85,C86,C87,D1,D10,D11,D2,D3,D4,D5,D8,D9
`Chr2:62416864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B50,C23
`Chr2:62416954`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr2:62417184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr2:62417215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794633.1

568 aa

284

568

Cu-oxidase_3

Cu-oxidase

Cu-oxidase_2

PF07732 Cu-oxidase_3 36-147 aa PF00394 Cu-oxidase 160-312 aa PF07731 Cu-oxidase_2 416-551 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794633.1`	Pfam	`PF07732`	Cu-oxidase_3	Domain	36	147	1.1e-40	139.1	Multicopper oxidase
`XP_057794633.1`	Pfam	`PF00394`	Cu-oxidase	Domain	160	312	2.2e-39	135.8	Multicopper oxidase
`XP_057794633.1`	Pfam	`PF07731`	Cu-oxidase_2	Domain	416	551	5.9e-44	149.9	Multicopper oxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938650.1
TTGGGGGTCCTTTTTGCTGTCGATGGATCGCTGTCAAAGAAGCAAATTCCGCCACACATATGTTGAAGACTAGTCAAGATTTTCCAATTTCTAGAAAATTAAAAATCAAGCAAATAAAGGCTGTCTCTAACAATTAGTTAATGGTTGGTACATAGTATAATGTAGAAAAGAATATCGGAATCATGATGGAAGGAAGAGACGTGAGAAAATAAGATCTATAGCTACCGCCATTTTTCCACAATCAACACACACACGTTGCA...

CDS

1 records

下载 CDS FASTA

LOC131010940
ATGGGATCCACAAAGACGACGAGAATCTTGCATTTTCTAGCATTTTTTCTCTTAGCTGGAGTGATTTCTATCCATGCCAAGACTCATCATCAAACCTTTGTAGTGAGTGATGCTCCATATAGTAGGCTGTGTAGCAACAAGAGCATATTGACTGTAAATGGAAAGTTTCCTGGACCGACTGTACGTGTAACTGAGGGTGATACCATTGCAATTGTTGTTGTGAATAGAGCAAGAGAAAATATAACCATTCATTGGCATGG...

Protein

1 records

下载 Protein FASTA

XP_057794633.1
MGSTKTTRILHFLAFFLLAGVISIHAKTHHQTFVVSDAPYSRLCSNKSILTVNGKFPGPTVRVTEGDTIAIVVVNRARENITIHWHGVKQPRYPWSDGPEYITQCPIQPGSNFSQKIVLSDEIGTMWWHAHSDWSRATVHGALIVYPLIQNDYPFPVPDEEVPIILGEWWKSDVQAVLTEFLQTGGDPNISDAFLINGQPGDLYDLPCSTKDTFKLSVDHGKRYLIRMVNAVMNTIMFFKIAGHNVTIVGSDGAYLKPFT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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