Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004014`

染色体: Chr02 坐标: 62444752-62446837 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004014`
名称	SmilChr02G004014
描述	uncharacterized oxidoreductase At4g09670-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62444752 - 62446837 / `-`

ID 对照

NCBI Gene ID	`LOC131010947`
GeneID	`131010947`
locus_tag	`-`
NCBI Name	`LOC131010947`
原始查询	`LOC131010947`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826553]; symbol=AT4G09670; hit=AT4G09670; species=arabidopsis; confidence=high
产物	Oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826553]; symbol=AT4G09670; hit=AT4G09670; species=arabidopsis; confidence=high
Arabidopsis	`AT4G09670` (AT4G09670) Oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826553] identity=57.6; qcov=1.01; evalue=3.19e-156; confidence=high
Rice	`Os10g0403700` (Ord) - identity=57.1; qcov=1.02; evalue=7.15e-136; confidence=high
GO	GO:0000166 (nucleotide binding)
KEGG	-
Pfam	PF01408 (GFO_IDH_MocA); PF22725 (GFO_IDH_MocA_C3)
InterPro	-
eggNOG	-
NR	GeneID:131010947

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057794637.1`
2	Cytoplasm	细胞质	0.80000	`XP_057794637.1`
3	Nucleus	细胞核	0.00000	`XP_057794637.1`
4	Chromosome	染色体	0.00000	`XP_057794637.1`
5	Centromere	着丝粒	0.00000	`XP_057794637.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62444960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B8,C36,C77
`Chr2:62444962`	`CTG`	`C`	2bp_deletion	frameshift_variant	4	B10,B8,C36,C77
`Chr2:62444962`	`CTG`	`C`	2bp_deletion	CDS_variant	4	B10,B8,C36,C77
`Chr2:62444967`	`C`	`CCG`	2bp_insertion	frameshift_variant	4	B10,B8,C36,C77
`Chr2:62444967`	`C`	`CCG`	2bp_insertion	CDS_variant	4	B10,B8,C36,C77
`Chr2:62445031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:62445260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,B37,D7
`Chr2:62445275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B12,C57
`Chr2:62445279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:62445288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B8,C36,C77
`Chr2:62445319`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B131,C48
`Chr2:62446369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B12,B4,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794637.1

350 aa

175

350

GFO_IDH_MocA

GFO_IDH_MocA_C3

PF01408 GFO_IDH_MocA 6-125 aa PF22725 GFO_IDH_MocA_C3 145-259 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794637.1`	Pfam	`PF01408`	GFO_IDH_MocA	Domain	6	125	1.8e-20	74.5	Oxidoreductase family, NAD-binding Rossmann fold
`XP_057794637.1`	Pfam	`PF22725`	GFO_IDH_MocA_C3	Domain	145	259	2.4e-10	41.2	GFO/IDH/MocA C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938654.1
ACCAAACTGCAATTCATATTTAAGTGCCAAAACACTTTCCCAAAAAACTCATAAATCTCAAATTCGCACTCCAATCATTTCCCCTCCTCAAGAAAAGTCAAACAAGCAAAAACATGGCTTCGGCGCCTATCAAATTCGGGATCCTCGGCTGCGCGAAGATAGCCCGCAAGCTCTCCCGCGCCATCGTTCTCTCCGGGAACGCCGCGATTGCCGCGATCGGCAGCCGATCGCTGGAGAAGGCCGTCGGCTTCGCGCGGGAG...

CDS

1 records

下载 CDS FASTA

LOC131010947
ATGGCTTCGGCGCCTATCAAATTCGGGATCCTCGGCTGCGCGAAGATAGCCCGCAAGCTCTCCCGCGCCATCGTTCTCTCCGGGAACGCCGCGATTGCCGCGATCGGCAGCCGATCGCTGGAGAAGGCCGTCGGCTTCGCGCGGGAGAACGGCTTCCCGGAGTCGGCGAGGGCCTACGGCTCGTACGCCGCCGTATTGGACGATCCGGACGTGGACGCAGTGTACATACCGCTGCCGACGAGCCTGCACGTGCAATGGGC...

Protein

1 records

下载 Protein FASTA

XP_057794637.1
MASAPIKFGILGCAKIARKLSRAIVLSGNAAIAAIGSRSLEKAVGFARENGFPESARAYGSYAAVLDDPDVDAVYIPLPTSLHVQWAVLAARKGKHVLLEKPVALSVSELDVILGECESSGVQFMDTTMWMHHPRTHQMKDFLSDSTTFGQLKSVESNFSFPADKAFLENDIRVKPDLDALGVLGDAGWYCIRSILWAADYDLPKSAVALPDAVLNDAGVVLSCSAELQWQDGRAGSFRCSFLADLNMDVTILGTNGTLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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