Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004020`

染色体: Chr02 坐标: 62500204-62504156 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004020`
名称	SmilChr02G004020
描述	uncharacterized SmilChr02G004020
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62500204 - 62504156 / `+`

ID 对照

NCBI Gene ID	`LOC131010950`
GeneID	`131010950`
locus_tag	`-`
NCBI Name	`LOC131010950`
原始查询	`LOC131010950`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829247]; symbol=AT4G31200; hit=AT4G31200; species=arabidopsis; confidence=high
产物	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829247]; symbol=AT4G31200; hit=AT4G31200; species=arabidopsis; confidence=high
Arabidopsis	`AT4G31200` (AT4G31200) SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829247] identity=63.3; qcov=0.837; evalue=0; confidence=high
Rice	`Os06g0682700` - identity=58.2; qcov=0.846; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0006396 (RNA processing); GO:0006874 (intracellular calcium ion homeostasis); GO:0048471 (perinuclear region of cytoplasm)
KEGG	-
Pfam	PF01805 (Surp); PF04818 (CID); PF25123 (SWAP1_C)
InterPro	-
eggNOG	-
NR	GeneID:131010950

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794640.1`
2	Cytoplasm	细胞质	0.20000	`XP_057794640.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057794640.1`
4	Chromosome	染色体	0.00000	`XP_057794640.1`
5	Centromere	着丝粒	0.00000	`XP_057794640.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62501366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:62501644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A24,A7,B108,B2,D5
`Chr2:62501702`	`GAA`	`G`	2bp_deletion	frameshift_variant	1	C64
`Chr2:62501702`	`GAA`	`G`	2bp_deletion	CDS_variant	1	C64
`Chr2:62502776`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:62503164`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B33,C4,C48
`Chr2:62503190`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr2:62503502`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794640.1

664 aa

332

664

Surp

CID

SWAP1_C

PF01805 Surp 110-168 aa PF04818 CID 261-383 aa PF25123 SWAP1_C 496-664 aa

XP_057794641.1

664 aa

332

664

Surp

CID

SWAP1_C

PF01805 Surp 110-168 aa PF04818 CID 261-383 aa PF25123 SWAP1_C 496-664 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794640.1`	Pfam	`PF01805`	Surp	Domain	110	168	7.5e-16	58.2	Surp module
`XP_057794640.1`	Pfam	`PF04818`	CID	Repeat	261	383	8.7e-22	78.3	CID domain
`XP_057794640.1`	Pfam	`PF25123`	SWAP1_C	Domain	496	664	3.8e-88	294.5	SUPPRESSOR-OF-WHITE-APRICOT-like, C-terminal
`XP_057794641.1`	Pfam	`PF01805`	Surp	Domain	110	168	7.5e-16	58.2	Surp module
`XP_057794641.1`	Pfam	`PF04818`	CID	Repeat	261	383	8.7e-22	78.3	CID domain
`XP_057794641.1`	Pfam	`PF25123`	SWAP1_C	Domain	496	664	3.8e-88	294.5	SUPPRESSOR-OF-WHITE-APRICOT-like, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938657.1
TATTATTATTATTATTATTAATCTTTTTTTTTGGATAGTGTTTTTTTTTTTTTTTTAGAACACCATCATCTTTCTTCTTGAACCCTAATTCCCCTTCTCCCTCGTCTGATCTTCAATTCCAGAGTTTGGGGATACAGCAGCTGAGCAGCAGATTCAAGAAAAGGATCTTCTGGGGGGTGCCTACTGAGATAGTTCTTGTGAAACTGCTGATGGATCGACCGCCTCATGATTATGGTGCTCCTATGTCATATGGACAGCAG...

XM_057938658.1
ACCATCATCTTTCTTCTTGAACCCTAATTCCCCTTCTCCCTCGTCTGATCTTCAATTCCAGAGTTTGGGGATACAGCAGCTGAGCAGCAGATTCAAGAAAAGGTATTTATGGAAGACGATTTCACCTAACATTTCTTTTTTTTATGGTGAAGATATTTAACGAGTTTTGTTGGTGTGATTACTAAAATCCATGTTTATGCGTAAAATTGCTGAAATCACGTCTGAAATTGTTGCCGAAATCATGTTTATTTAAATATGTC...

CDS

2 records

下载 CDS FASTA

LOC131010950
ATGGATCGACCGCCTCATGATTATGGTGCTCCTATGTCATATGGACAGCAGCAAGCTAGTAATGCACAACAGCAGCAGCAGCAGTATGGTTTTCATCCACAGCACCAGCAATTTCCTCCATCTGTTCATGGCCCTCCTTTTATGCCCCCTCATCCTCCTGTACAACAATTCCCCTATCCTCGTCCAATGCAACAAACTCAACTCTATCCACATTTGCCTCCTCACCCTTATCAACAAACACCTTCTTTCCCTCCACATGT...

Protein

2 records

下载 Protein FASTA

XP_057794640.1
MDRPPHDYGAPMSYGQQQASNAQQQQQQYGFHPQHQQFPPSVHGPPFMPPHPPVQQFPYPRPMQQTQLYPHLPPHPYQQTPSFPPHVPPHLLPSPYPGPYEAAPPPAPAPSDPELQKRIDKLVEYAVKNGPEFEAVVREREQDNPAYGFLFGGEGHNYYRYKLWMATRPLMGPFNPQFPGSMPVLHPPNPMMSPAPINAPNAAAAGSAHLQQPPFSPFYEQQHPHHSQPMVGHSRPEFDQPYRSFKGLSRPLPSDVEMEM...

XP_057794641.1
MDRPPHDYGAPMSYGQQQASNAQQQQQQYGFHPQHQQFPPSVHGPPFMPPHPPVQQFPYPRPMQQTQLYPHLPPHPYQQTPSFPPHVPPHLLPSPYPGPYEAAPPPAPAPSDPELQKRIDKLVEYAVKNGPEFEAVVREREQDNPAYGFLFGGEGHNYYRYKLWMATRPLMGPFNPQFPGSMPVLHPPNPMMSPAPINAPNAAAAGSAHLQQPPFSPFYEQQHPHHSQPMVGHSRPEFDQPYRSFKGLSRPLPSDVEMEM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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