Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004024`

染色体: Chr02 坐标: 62519489-62524038 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004024`
名称	SmilChr02G004024
描述	uncharacterized protein At1g76660-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62519489 - 62524038 / `-`

ID 对照

NCBI Gene ID	`LOC131010956`
GeneID	`131010956`
locus_tag	`-`
NCBI Name	`LOC131010956`
原始查询	`LOC131010956`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:843999]; symbol=AT1G76660; hit=AT1G76660; species=arabidopsis; confidence=high
产物	hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:843999]; symbol=AT1G76660; hit=AT1G76660; species=arabidopsis; confidence=high
Arabidopsis	`AT1G76660` (AT1G76660) hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:843999] identity=55.3; qcov=0.987; evalue=1.91e-142; confidence=high
Rice	`Os01g0103800` (OsDW1-01g) - identity=44.3; qcov=1.13; evalue=5.82e-110; confidence=medium
GO	-
KEGG	-
Pfam	PF30477 (At1g76660)
InterPro	-
eggNOG	-
NR	GeneID:131010956

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057794649.1`
2	Nucleus	细胞核	0.00000	`XP_057794649.1`
3	Chromosome	染色体	0.00000	`XP_057794649.1`
4	Centromere	着丝粒	0.00000	`XP_057794649.1`
5	Chromatin	染色质	0.00000	`XP_057794649.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62519919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr2:62520792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr2:62520896`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:62521121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,D11
`Chr2:62521184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B97,C40,C44,C71,D1
`Chr2:62521238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr2:62521409`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,C31
`Chr2:62521490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:62521692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794649.1

451 aa

226

451

At1g76660

PF30477 At1g76660 4-446 aa

XP_057794650.1

451 aa

226

451

At1g76660

PF30477 At1g76660 4-446 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794649.1`	Pfam	`PF30477`	At1g76660	Family	4	446	4.6e-173	577.3	At1g76660-like
`XP_057794650.1`	Pfam	`PF30477`	At1g76660	Family	4	446	4.6e-173	577.3	At1g76660-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938667.1
CTCCCATCCCTTTTCCTTTTTTTCGTTATTACTTTAAAAAAAAATTACTAACAAAAAGGAGAAAAAAGAAAAGGAAAAGAAAAGCAATTTTAGCAAACACTACAATCAATCAAAAAAGAAAAAAAGGAAGAGAAACCAGATTACAGATTAGATCTAGCCATTGCTTTTCCTTTTCCCTTTCACACACACACAGTATATTTTTTTCATTAGCTTATTTTTTTTATCAGTGAGCTTCCACAGATCTCAGCAATGCAAATGTA...

XM_057938666.1
TACTTTAAAAAAAAATTACTAACAAAAAGGAGAAAAAAGAAAAGGAAAAGAAAAGCAATTTTAGCAAACACTACAATCAATCAAAAAAGAAAAAAAGGAAGAGAAACCAGATTACAGATTAGATCTAGCCATTGCTTTTCCTTTTCCCTTTCACACACACACAGTATATTTTTTTCATTAGCTTATTTTTTTTATCAGTGAGCTTCCACAGATCTCAGCAATGCAAATGTAGGCCGTTTTTCTCAGCTCAGGGGAGATAA...

CDS

2 records

下载 CDS FASTA

LOC131010956
ATGGCTTCGGAGCAGATTAGATTTCTGCAGCCACAGCAAGCACCAGCATCCCGGCGCAAGAGGTGGGGAGGTTGTTGGAGTGGACTTTCTTGTTTTGGTAAACAAAAAGGTGGAAAACGAATCGTGCCTGCATCAAGAATGCCTGAGGGAAACCAAGCTTCGAATCAGCCAAATGGACCTCAAGCTGTTGGCCTGCCCAATCAGACAACTGGAATTGCTCCATCTCTTTATGCTCCACCATCTTCGCCTGCTTCCTTCTC...

Protein

2 records

下载 Protein FASTA

XP_057794649.1
MASEQIRFLQPQQAPASRRKRWGGCWSGLSCFGKQKGGKRIVPASRMPEGNQASNQPNGPQAVGLPNQTTGIAPSLYAPPSSPASFSNSALPSTAQSPSCFLSANSPGDPSSTMFVTGPYAHETQLVSPPVFSTFTTEPSTAPLTPPPELAHVTTPSSPDVPYAHFLSSSANNKNSYFTANDLHATYSLYPGSPASTLRSPISRTPEKEYPSQWSPSIPSKEPVYSKSGSGRYIGLEASGASKSRQDSNFFCPETFAQFY...

XP_057794650.1
MASEQIRFLQPQQAPASRRKRWGGCWSGLSCFGKQKGGKRIVPASRMPEGNQASNQPNGPQAVGLPNQTTGIAPSLYAPPSSPASFSNSALPSTAQSPSCFLSANSPGDPSSTMFVTGPYAHETQLVSPPVFSTFTTEPSTAPLTPPPELAHVTTPSSPDVPYAHFLSSSANNKNSYFTANDLHATYSLYPGSPASTLRSPISRTPEKEYPSQWSPSIPSKEPVYSKSGSGRYIGLEASGASKSRQDSNFFCPETFAQFY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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