当前解析结果
SmilChr02G004033| 统一新 Gene ID | SmilChr02G004033 |
|---|---|
| 名称 | SmilChr02G004033 |
| 描述 | uncharacterized SmilChr02G004033 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62627829 - 62630397 / + |
| NCBI Gene ID | LOC131010966 |
|---|---|
| GeneID | 131010966 |
| locus_tag | - |
| NCBI Name | LOC131010966 |
| 原始查询 | LOC131010966 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826563]; symbol=AT4G09750; hit=AT4G09750; species=arabidopsis; confidence=high |
| 产物 | NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826563]; symbol=AT4G09750; hit=AT4G09750; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G09750 (AT4G09750)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826563] identity=77.9; qcov=0.927; evalue=1.05e-154; confidence=high |
| Rice | Os06g0590301- identity=71.4; qcov=0.923; evalue=4.66e-142; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00106 (adh_short); PF01370 (Epimerase); PF08659 (KR); PF13561 (adh_short_C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010966 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057794666.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057794666.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057794667.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057794667.1 |
| 5 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057794667.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62629319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr2:62629343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr2:62629459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B132,C16,C22 |
Chr2:62629682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr2:62629701 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B57,B9,C67 |
Chr2:62629884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C49,C5 |
Chr2:62630098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B18,B91 |
Chr2:62630258 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | A2,B19 |
Chr2:62630258 |
CT |
C |
1bp_deletion | CDS_variant | 2 | A2,B19 |
Chr2:62630263 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | A2,B19 |
Chr2:62630263 |
T |
TA |
1bp_insertion | CDS_variant | 2 | A2,B19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794666.1PF00106
adh_short 64-265 aa
PF08659
KR 67-181 aa
PF01370
Epimerase 67-247 aa
PF13561
adh_short_C2 70-283 aa
XP_057794667.1PF00106
adh_short 64-265 aa
PF08659
KR 67-181 aa
PF01370
Epimerase 67-246 aa
PF13561
adh_short_C2 70-271 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794666.1 |
Pfam | PF00106 |
adh_short | Domain | 64 | 265 | 9.3e-26 | 91.2 | short chain dehydrogenase |
XP_057794666.1 |
Pfam | PF08659 |
KR | Family | 67 | 181 | 7.6e-09 | 36.5 | KR domain |
XP_057794666.1 |
Pfam | PF01370 |
Epimerase | Family | 67 | 247 | 5.7e-08 | 33.2 | NAD dependent epimerase/dehydratase family |
XP_057794666.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 70 | 283 | 7.5e-20 | 72.2 | Enoyl-(Acyl carrier protein) reductase |
XP_057794667.1 |
Pfam | PF00106 |
adh_short | Domain | 64 | 265 | 4.3e-26 | 92.3 | short chain dehydrogenase |
XP_057794667.1 |
Pfam | PF08659 |
KR | Family | 67 | 181 | 5.1e-09 | 37.0 | KR domain |
XP_057794667.1 |
Pfam | PF01370 |
Epimerase | Family | 67 | 246 | 4.2e-08 | 33.6 | NAD dependent epimerase/dehydratase family |
XP_057794667.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 70 | 271 | 1.8e-19 | 71.0 | Enoyl-(Acyl carrier protein) reductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。