Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004037`

染色体: Chr02 坐标: 62664740-62672576 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004037`
名称	SmilChr02G004037
描述	protein GIGANTEA
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62664740 - 62672576 / `-`

ID 对照

NCBI Gene ID	`LOC131010970`
GeneID	`131010970`
locus_tag	`-`
NCBI Name	`LOC131010970`
原始查询	`LOC131010970`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein GIGANTEA
产物	protein GIGANTEA
Arabidopsis	`AT1G22770` (GI) gigantea protein (GI) [Source:NCBI gene (formerly Entrezgene);Acc:838883] identity=73.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0182600` (GI) - identity=70.4; qcov=1.01; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0006950 (response to stress); GO:0042752 (regulation of circadian rhythm); GO:0048586 (regulation of long-day photoperiodism, flowering)
KEGG	smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF28518 (GIGANTEA_C); PF30921 (GIGANTEA_M); PF30924 (GIGANTEA_N)
InterPro	-
eggNOG	-
NR	GeneID:131010970

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794671.1`
2	Cytoplasm	细胞质	0.20000	`XP_057794671.1`
3	Chromosome	染色体	0.00000	`XP_057794671.1`
4	Centromere	着丝粒	0.00000	`XP_057794671.1`
5	Chromatin	染色质	0.00000	`XP_057794671.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62665121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr2:62665672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,A10,B103
`Chr2:62665729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:62666442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:62666492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr2:62666789`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,C71,D11
`Chr2:62667038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr2:62667115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr2:62667917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr2:62668771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794671.1

1168 aa

584

1168

GIGANTEA_N

GIGANTEA_M

GIGANTEA_C

PF30924 GIGANTEA_N 4-406 aa PF30921 GIGANTEA_M 464-798 aa PF28518 GIGANTEA_C 872-1164 aa

XP_057794672.1

1168 aa

584

1168

GIGANTEA_N

GIGANTEA_M

GIGANTEA_C

PF30924 GIGANTEA_N 4-406 aa PF30921 GIGANTEA_M 464-798 aa PF28518 GIGANTEA_C 872-1164 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794671.1`	Pfam	`PF30924`	GIGANTEA_N	Repeat	4	406	2.6e-248	824.2	GIGANTEA N-terminal domain
`XP_057794671.1`	Pfam	`PF30921`	GIGANTEA_M	Repeat	464	798	2.8e-190	632.6	GIGANTEA middle domain
`XP_057794671.1`	Pfam	`PF28518`	GIGANTEA_C	Repeat	872	1164	6.4e-152	505.4	GIGANTEA protein C-terminal domain
`XP_057794672.1`	Pfam	`PF30924`	GIGANTEA_N	Repeat	4	406	2.6e-248	824.2	GIGANTEA N-terminal domain
`XP_057794672.1`	Pfam	`PF30921`	GIGANTEA_M	Repeat	464	798	2.8e-190	632.6	GIGANTEA middle domain
`XP_057794672.1`	Pfam	`PF28518`	GIGANTEA_C	Repeat	872	1164	6.4e-152	505.4	GIGANTEA protein C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938689.1
ATGCTGATTCACATCAATATTTCATTAACATGGCATGCCACATGGCTTAGTGAGGCATGAGGAAAATATCATAGCCACGTATGCATATGGGAGATTCCAGTTAAAGATCTCATTCCTCTCTCCCTTTCTCTCTCTAACCTCTCTCTTTTCTCTCTCTAAGCTCTCTCCACCCAAAATCCTACCCTCGAAAATCTTTTCATTTAACTCTGGAGCTGCACCCTCGTCTCAGATTACAACAATTATTTCGCCTTGTTTCCTTC...

XM_057938688.1
AAAGATCTCATTCCTCTCTCCCTTTCTCTCTCTAACCTCTCTCTTTTCTCTCTCTAAGCTCTCTCCACCCAAAATCCTACCCTCGAAAATCTTTTCATTTAACTCTGGAGCTGCACCCTCGTCTCAGATTACAACAATTATTTCGCCTTGTTTCCTTCGAATCTTCCATAAGACTCAAACCGAGATAGATTTATGGCAACTTCAAATGAGAAGTGGATCGACAGCTTGCAGTTCTCTTCATTATTTTGGCCGCCTCCGCA...

CDS

2 records

下载 CDS FASTA

LOC131010970
ATGGCAACTTCAAATGAGAAGTGGATCGACAGCTTGCAGTTCTCTTCATTATTTTGGCCGCCTCCGCAAGATACAGAACAACGAAAGGCTCAAATTACTGCATATGTTGAATATTTTGGGCAGTTCACCTCAGAACAATTTGCTGATGATATAGCAGAGCTGATCCGTAGCCGGTATCCATCCAAGGAGAACAGACTTTTTGACGATGTTCTTGCAACTTTTGTTCTTCATCATCCAGAGCATGGCCATGCTGTTCTACT...

Protein

2 records

下载 Protein FASTA

XP_057794671.1
MATSNEKWIDSLQFSSLFWPPPQDTEQRKAQITAYVEYFGQFTSEQFADDIAELIRSRYPSKENRLFDDVLATFVLHHPEHGHAVLLPIISCIIDSTLEYDRSGPPFASFISLFCPNSENEYSEQWALACGEILRILTHYNRPIYKLERHENLPDRSSSGDHASTSKPIDGELSSSPPSLAERKPLRPLSPWITDILLATPLGIRSDYFRWCGGVMGKYAAGELKPPLTATSRGSGKHPQLMPSTPRWAVANGAGVILSV...

XP_057794672.1
MATSNEKWIDSLQFSSLFWPPPQDTEQRKAQITAYVEYFGQFTSEQFADDIAELIRSRYPSKENRLFDDVLATFVLHHPEHGHAVLLPIISCIIDSTLEYDRSGPPFASFISLFCPNSENEYSEQWALACGEILRILTHYNRPIYKLERHENLPDRSSSGDHASTSKPIDGELSSSPPSLAERKPLRPLSPWITDILLATPLGIRSDYFRWCGGVMGKYAAGELKPPLTATSRGSGKHPQLMPSTPRWAVANGAGVILSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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