当前解析结果
SmilChr01G004225| 统一新 Gene ID | SmilChr01G004225 |
|---|---|
| 名称 | SmilChr01G004225 |
| 描述 | uncharacterized SmilChr01G004225 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60618548 - 60619246 / + |
| NCBI Gene ID | LOC131010998 |
|---|---|
| GeneID | 131010998 |
| locus_tag | - |
| NCBI Name | LOC131010998 |
| 原始查询 | LOC131010998 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=27.7; qcov=0.841; evalue=5.79e-13; confidence=low |
| Rice | Os02g0118800- identity=26.4; qcov=0.784; evalue=3.55e-11; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010998 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057794715.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057794715.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057794715.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057794715.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057794715.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60618557 |
G |
GCT |
2bp_insertion | frameshift_variant | 32 | A23,B101,B11,B12,B15,B30,B36,B37,B44,B48,B56,B58,B73,B84,B89,B90,B97,C16,C20,C21,C30,C31,C41,C45,C46,C48,C63,C69,C72,C76,C83,D2 |
Chr1:60618558 |
TGG |
T |
2bp_deletion | frameshift_variant | 31 | A23,B101,B11,B12,B15,B30,B36,B37,B44,B48,B56,B58,B73,B84,B89,B90,B97,C16,C20,C21,C30,C31,C41,C45,C46,C63,C69,C72,C76,C83,D2 |
Chr1:60618604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:60618619 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A11,A19,B112,B125,B13,B130,B25,B80,B89,C86 |
Chr1:60618630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr1:60618763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B4 |
Chr1:60618800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B131,C58 |
Chr1:60618874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B38,B49,B8,B91,C68 |
Chr1:60618875 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | A6,B137,B31,C52,C75,C79,D9 |
Chr1:60618878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr1:60618902 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr1:60618905 |
C |
T |
EMS_canonical_SNV | stop_gained | 100 | A11,A13,A15,A24,A25,A4,A5,B1,B103,B106,B111,B112,B113,B115,B117,B12,B124,B127,B13,B130,B131,B133,B14,B140,B19,B2,B20,B21,B24,B27,B29,B3,B32,B33,B38,B39,B4,B46,B47,B50,B53,B54,B55,B57,B60,B62,B63,B64,B65,B71,B8,B81,B82,B85,B86,B87,B9,B94,B98,C14,C16,C18,C2,C21,C23,C26,C27,C28,C31,C33,C34,C42,C44,C45,C47,C48,C49,C51,C53,C55,C56,C57,C58,C61,C64,C65,C66,C71,C74,C76,C77,C78,C8,C80,C85,C87,D3,D4,D5,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794715.1PF13966
zf-RVT 34-128 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794715.1 |
Pfam | PF13966 |
zf-RVT | Domain | 34 | 128 | 1.9e-16 | 61.2 | zinc-binding in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。