当前解析结果
SmilChr02G004069| 统一新 Gene ID | SmilChr02G004069 |
|---|---|
| 名称 | SmilChr02G004069 |
| 描述 | N6-adenosine-methyltransferase non-catalytic subunit MTB |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62970165 - 62977569 / - |
| NCBI Gene ID | LOC131011002 |
|---|---|
| GeneID | 131011002 |
| locus_tag | - |
| NCBI Name | LOC131011002 |
| 原始查询 | LOC131011002 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | N6-adenosine-methyltransferase non-catalytic subunit MTB |
| 产物 | N6-adenosine-methyltransferase non-catalytic subunit MTB |
| Arabidopsis | AT4G09980 (EMB1691)Methyltransferase MT-A70 family protein [Source:NCBI gene (formerly Entrezgene);Acc:826589] identity=53.4; qcov=0.939; evalue=0; confidence=high |
| Rice | Os10g0447600- identity=58.2; qcov=0.643; evalue=0; confidence=high |
| GO | GO:0003729 (mRNA binding); GO:0005634 (nucleus); GO:0008168 (methyltransferase activity); GO:0036396 (RNA N6-methyladenosine methyltransferase complex); GO:0080009 (GO:0080009) |
| KEGG | - |
| Pfam | PF05063 (MT-A70) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011002 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057794717.1 |
| 2 | Nuclear speckle | 核斑点 | 0.60000 | XP_057794717.1 |
| 3 | Nucleoplasm | 核质 | 0.40000 | XP_057794717.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794717.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794717.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62970366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,A10,B19,B84,C40 |
Chr2:62970469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C75,D1 |
Chr2:62970498 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr2:62971052 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,A10,B19,C40 |
Chr2:62972149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr2:62973898 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C87 |
Chr2:62973898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr2:62974749 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B75,C26,C4,C5 |
Chr2:62974769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:62974805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:62974971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C54,C71,D4 |
Chr2:62975738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794717.1PF05063
MT-A70 811-988 aa
XP_057794718.1PF05063
MT-A70 811-988 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794717.1 |
Pfam | PF05063 |
MT-A70 | Family | 811 | 988 | 1.6e-51 | 175.4 | MT-A70 |
XP_057794718.1 |
Pfam | PF05063 |
MT-A70 | Family | 811 | 988 | 1.6e-51 | 175.4 | MT-A70 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。