Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004076

染色体: Chr02 坐标: 63053717-63055047 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004076
名称SmilChr02G004076
描述heavy metal-associated isoprenylated plant protein 30-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向63053717 - 63055047 / -

ID 对照

NCBI Gene IDLOC131011009
GeneID131011009
locus_tag-
NCBI NameLOC131011009
原始查询LOC131011009

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述heavy metal-associated isoprenylated plant protein 30-like
产物heavy metal-associated isoprenylated plant protein 30-like
ArabidopsisAT2G18196 (AT2G18196)
Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816334]
identity=45; qcov=0.879; evalue=3.45e-15; confidence=low
RiceOs08g0512200 (pi55-2)
-
identity=60; qcov=0.989; evalue=2.61e-36; confidence=medium
GOGO:0046872 (metal ion binding)
KEGG-
PfamPF00403 (HMA)
InterPro-
eggNOG-
NRGeneID:131011009

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057794725.1
2 Cytoplasm 细胞质 0.60000 XP_057794725.1
3 Nucleus 细胞核 0.40000 XP_057794725.1
4 Chromosome 染色体 0.00000 XP_057794725.1
5 Centromere 着丝粒 0.00000 XP_057794725.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:63053991 C T EMS_canonical_SNV CDS_variant 1 C84
Chr2:63054037 C T EMS_canonical_SNV CDS_variant 1 C40
Chr2:63054415 AGG A 2bp_deletion frameshift_variant 34 A11,A15,A18,A2,A3,A4,B125,B126,B14,B24,B27,B33,B52,B73,B74,B75,B81,B9,C12,C16,C2,C20,C22,C26,C29,C32,C36,C4,C42,C48,C5,C68,C86,C87
Chr2:63054453 CAA C 2bp_deletion frameshift_variant 158 A1,A10,A18,A19,A2,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B101,B102,B103,B104,B108,B109,B11,B111,B112,B114,B115,B118,B12,B120,B121,B122,B124,B125,B127,B128,B13,B130,B132,B133,B134,B135,B138,B139,B14,B140,B15,B17,B18,B19,B2,B20,B21,B22,B24,B26,B27,B28,B3,B31,B32,B33,B34,B35,B36,B38,B39,B4,B40,B45,B46,B47,B48,B5,B50,B53,B54,B58,B59,B6,B60,B62,B63,B65,B66,B67,B69,B7,B70,B71,B75,B76,B8,B83,B85,B86,B89,B90,B91,B92,B93,B95,B97,B98,B99,C1,C11,C16,C17,C18,C19,C21,C23,C24,C25,C28,C33,C35,C38,C40,C44,C45,C46,C47,C48,C49,C52,C53,C56,C57,C61,C63,C64,C65,C66,C69,C7,C73,C75,C76,C77,C78,C79,C8,C80,C81,C84,C85,C87,D1,D11,D2,D3,D5,D7,D8
Chr2:63054472 G GC 1bp_insertion frameshift_variant 157 A1,A10,A18,A19,A2,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B101,B102,B103,B104,B108,B109,B11,B111,B112,B114,B115,B118,B12,B120,B121,B122,B124,B125,B127,B128,B13,B130,B132,B133,B134,B135,B138,B139,B14,B140,B15,B17,B18,B19,B2,B20,B21,B22,B24,B26,B27,B28,B3,B31,B32,B33,B34,B35,B36,B38,B39,B4,B40,B45,B46,B47,B48,B5,B50,B53,B54,B58,B59,B6,B60,B62,B63,B65,B66,B67,B69,B7,B70,B71,B75,B76,B8,B83,B85,B86,B89,B90,B91,B92,B93,B95,B97,B98,B99,C1,C11,C16,C17,C18,C19,C21,C23,C24,C25,C28,C33,C35,C38,C40,C44,C45,C47,C48,C49,C52,C53,C56,C57,C61,C63,C64,C65,C66,C69,C7,C73,C75,C76,C77,C78,C79,C8,C80,C81,C84,C85,C87,D1,D11,D2,D3,D5,D7,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057794725.1
112 aa
N
1
56
112
HMA
C
PF00403 HMA 36-80 aa
XP_057794726.1
91 aa
N
1
46
91
HMA
C
PF00403 HMA 15-59 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057794725.1 Pfam PF00403 HMA Domain 36 80 1.6e-06 29.1 Heavy-metal-associated domain
XP_057794726.1 Pfam PF00403 HMA Domain 15 59 9.7e-07 29.8 Heavy-metal-associated domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057938742.1
GAACACGCAATACTGATCATATAAGATAATGTTAAGCTACAATTTTATTTTAAATAAGAACTACACGGTAAAAATAACTCCCTCCATCCCATTTGTATTAGCCCCTTCAGTGAGAGTAAATGGGCCAATAAAAATGGGACGGAGGGAGTATGAAAATGTGATCAATTGTATTAATAGAAAAAAAAATTATAACAAAAAAAATATTTGTATAATCTAGAGTAGACGAAATGAATAAAAAAGATAGAAATAAAAAATTATTT...
XM_057938743.1
TACTGATCATATAAGATAATGTTAAGCTACAATTTTATTTTAAATAAGAACTACACGGTAAAAATAACTCCCTCCATCCCATTTGTATTAGCCCCTTCAGTGAGAGTAAATGGGCCAATAAAAATGGGACGGAGGGAGTATGAAAATGTGATCAATTGTATTAATAGAAAAAAAAATTATAACAAAAAAAATATTTGTATAATCTAGAGTAGACGAAATGAATAAAAAAGATAGAAATAAAAAATTATTTCTAAAAATAG...

CDS

2 records

下载 CDS FASTA
LOC131011009
ATGAGGATCAACATTCACTTTACTGTTGAGGGCCATCTTTTTCTCATGTATATATACGGTTCCCCTCTCACTACAGAACTCAAGGTGGAGATGGTCAGCATCCATGAGAAGAAACTGCGGAAATGCCTATCCAAGTTGAGAGGAATTGAAAAAGTAGAAGTAGACGGCAACAGTGAGAAGGTGGCGGTGATGGGGTATGCACACAGAAACAAGATACTCAAAGCAGTAAGAAGGGCTGGTCTCAAAGCAGATTTCTGGTC...
LOC131011009
ATGGAGACTACAGAACTCAAGGTGGAGATGGTCAGCATCCATGAGAAGAAACTGCGGAAATGCCTATCCAAGTTGAGAGGAATTGAAAAAGTAGAAGTAGACGGCAACAGTGAGAAGGTGGCGGTGATGGGGTATGCACACAGAAACAAGATACTCAAAGCAGTAAGAAGGGCTGGTCTCAAAGCAGATTTCTGGTCTGCCCAAAACGAGCTGCTCAACGCGTATGCAACTTCTAGTTTACAAAACATGAGATTCAACAA...

Protein

2 records

下载 Protein FASTA
XP_057794725.1
MRINIHFTVEGHLFLMYIYGSPLTTELKVEMVSIHEKKLRKCLSKLRGIEKVEVDGNSEKVAVMGYAHRNKILKAVRRAGLKADFWSAQNELLNAYATSSLQNMRFNNFFYF
XP_057794726.1
METTELKVEMVSIHEKKLRKCLSKLRGIEKVEVDGNSEKVAVMGYAHRNKILKAVRRAGLKADFWSAQNELLNAYATSSLQNMRFNNFFYF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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