当前解析结果
SmilChr02G004077| 统一新 Gene ID | SmilChr02G004077 |
|---|---|
| 名称 | SmilChr02G004077 |
| 描述 | probable inorganic phosphate transporter 1-9 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 63061183 - 63063735 / + |
| NCBI Gene ID | LOC131011010 |
|---|---|
| GeneID | 131011010 |
| locus_tag | - |
| NCBI Name | LOC131011010 |
| 原始查询 | LOC131011010 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inorganic phosphate transporter 1-9 |
| 产物 | probable inorganic phosphate transporter 1-9 |
| Arabidopsis | AT1G76430 (PHT1;9)phosphate transporter 1;9 [Source:NCBI gene (formerly Entrezgene);Acc:843976] identity=64.3; qcov=0.994; evalue=0; confidence=high |
| Rice | Os06g0325200 (PT10)- identity=64.8; qcov=0.99; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011010 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057794728.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057794728.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057794728.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057794728.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057794728.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:63061376 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B132 |
Chr2:63061376 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B132 |
Chr2:63061392 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr2:63061416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,C21 |
Chr2:63061438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr2:63061442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:63061533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,D11 |
Chr2:63061800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr2:63062919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C84,D10 |
Chr2:63063018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B40,C8 |
Chr2:63063026 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B17,C37 |
Chr2:63063369 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B40,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794728.1PF00083
Sugar_tr 23-494 aa
PF07690
MFS_1 28-411 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794728.1 |
Pfam | PF00083 |
Sugar_tr | Family | 23 | 494 | 3.3e-49 | 168.7 | Sugar (and other) transporter |
XP_057794728.1 |
Pfam | PF07690 |
MFS_1 | Family | 28 | 411 | 2.9e-29 | 102.8 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。