Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004107`

染色体: Chr02 坐标: 63369023-63376923 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004107`
名称	SmilChr02G004107
描述	squamosa promoter-binding-like protein 14
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	63369023 - 63376923 / `+`

ID 对照

NCBI Gene ID	`LOC131011038`
GeneID	`131011038`
locus_tag	`-`
NCBI Name	`LOC131011038`
原始查询	`LOC131011038`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	squamosa promoter-binding-like protein 14
产物	squamosa promoter-binding-like protein 14
Arabidopsis	`AT1G20980` (SPL14) squamosa promoter binding protein-like 14 [Source:NCBI gene (formerly Entrezgene);Acc:838692] identity=47.6; qcov=1.05; evalue=0; confidence=high
Rice	`Os08g0513700` (OsSPL15) - identity=51.2; qcov=0.541; evalue=0; confidence=medium
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0005634 (nucleus)
KEGG	-
Pfam	PF03110 (SBP); PF26102 (Ig_SPL7)
InterPro	-
eggNOG	-
NR	GeneID:131011038

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794763.1`
2	Cytoplasm	细胞质	0.40000	`XP_057794763.1`
3	Chromosome	染色体	0.00000	`XP_057794763.1`
4	Centromere	着丝粒	0.00000	`XP_057794763.1`
5	Chromatin	染色质	0.00000	`XP_057794763.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:63370179`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:63370295`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A8,B68,C47
`Chr2:63370329`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,B68,C47
`Chr2:63370465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr2:63370524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:63370663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:63372055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B113,B132,B7
`Chr2:63372152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr2:63372265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B86
`Chr2:63372298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr2:63372461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,C61,D1
`Chr2:63372572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794763.1

1040 aa

520

1040

SBP

Ig_SPL7

PF03110 SBP 157-230 aa PF26102 Ig_SPL7 617-724 aa

XP_057794764.1

1040 aa

520

1040

SBP

Ig_SPL7

PF03110 SBP 157-230 aa PF26102 Ig_SPL7 617-724 aa

XP_057794765.1

1040 aa

520

1040

SBP

Ig_SPL7

PF03110 SBP 157-230 aa PF26102 Ig_SPL7 617-724 aa

XP_057794766.1

1040 aa

520

1040

SBP

Ig_SPL7

PF03110 SBP 157-230 aa PF26102 Ig_SPL7 617-724 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794763.1`	Pfam	`PF03110`	SBP	Domain	157	230	7.3e-31	107.0	SBP domain
`XP_057794763.1`	Pfam	`PF26102`	Ig_SPL7	Domain	617	724	1.5e-31	109.6	SPL7-like, immunoglobulin-like domain
`XP_057794764.1`	Pfam	`PF03110`	SBP	Domain	157	230	7.3e-31	107.0	SBP domain
`XP_057794764.1`	Pfam	`PF26102`	Ig_SPL7	Domain	617	724	1.5e-31	109.6	SPL7-like, immunoglobulin-like domain
`XP_057794765.1`	Pfam	`PF03110`	SBP	Domain	157	230	7.3e-31	107.0	SBP domain
`XP_057794765.1`	Pfam	`PF26102`	Ig_SPL7	Domain	617	724	1.5e-31	109.6	SPL7-like, immunoglobulin-like domain
`XP_057794766.1`	Pfam	`PF03110`	SBP	Domain	157	230	7.3e-31	107.0	SBP domain
`XP_057794766.1`	Pfam	`PF26102`	Ig_SPL7	Domain	617	724	1.5e-31	109.6	SPL7-like, immunoglobulin-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009096720.1
GAACAAGAAGAAGAAAGGGAATAGGTAAAATATGTGAGTGAGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAAAAGTTGGTTGAGAGAAAGGAAAGGGAAGGAGAGAGAAAAGTAAAAGATAGTTGTATTGTACATAGGCATGAAATATAGAAACAGTTTTTGTGTCCTTTCATTTCGTTTCTTATTCCACATCCTTTGTTTCTTCTCTGTCTATTTTCTATATTTGTGCAGCAGATCTCTCCTTTGTGTAATCCGTAA...

XR_009096721.1
GAACAAGAAGAAGAAAGGGAATAGGTAAAATATGTGAGTGAGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAAAAGTTGGTTGAGAGAAAGGAAAGGGAAGGAGAGAGAAAAGTAAAAGATAGTTGTATTGTACATAGGCATGAAATATAGAAACAGTTTTTGTGTCCTTTCATTTCGTTTCTTATTCCACATCCTTTGTTTCTTCTCTGTCTATTTTCTATATTTGTGCAGCAGATCTCTCCTTTGTGTAATCCGTAA...

CDS

4 records

下载 CDS FASTA

LOC131011038
ATGGAAGAGGTAGGTGCCCGGATAGTTGCTCCTACAGTCATCCACCAGCATCTGACTGCGAGATTTTGTGATCCATATCCGATGGCTAAAAAACGCGCTCTGCCCTTTGACTCATCGAGCTTTCTGCCACAGAATACTGCAGAAAGTTGGAACCCCAAGTCCTGGAACTGGGATAGTGCCAGGTTTGTCGCCAAACCATTGCAACGCAATGGAGGCCAAGTGGGGGGTGGCGAAGAGATTCAGCCAGCCGTGCCAAGAAG...

Protein

4 records

下载 Protein FASTA

XP_057794763.1
MEEVGARIVAPTVIHQHLTARFCDPYPMAKKRALPFDSSSFLPQNTAESWNPKSWNWDSARFVAKPLQRNGGQVGGGEEIQPAVPRRKQVLSSASYSRTPAVSGEVDDNLVLNLRGGDGARSSGNTGGVNLVEPQTVSRPNKKVRSGSPGGTNYPMCQVDNCKEDLSTAKDYHRRHKVCEVHSKAGKALIGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDTTQRLLTPVIGDSNVGDNDVLNLLA...

XP_057794764.1
MEEVGARIVAPTVIHQHLTARFCDPYPMAKKRALPFDSSSFLPQNTAESWNPKSWNWDSARFVAKPLQRNGGQVGGGEEIQPAVPRRKQVLSSASYSRTPAVSGEVDDNLVLNLRGGDGARSSGNTGGVNLVEPQTVSRPNKKVRSGSPGGTNYPMCQVDNCKEDLSTAKDYHRRHKVCEVHSKAGKALIGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDTTQRLLTPVIGDSNVGDNDVLNLLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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