Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004117`

染色体: Chr02 坐标: 63462544-63468356 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004117`
名称	SmilChr02G004117
描述	CMP-sialic acid transporter 4-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	63462544 - 63468356 / `-`

ID 对照

NCBI Gene ID	`LOC131011040`
GeneID	`131011040`
locus_tag	`-`
NCBI Name	`LOC131011040`
原始查询	`LOC131011040`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CMP-sialic acid transporter 4-like
产物	CMP-sialic acid transporter 4-like
Arabidopsis	`AT5G41760` (AT5G41760) Nucleotide-sugar transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:834180] identity=41.5; qcov=0.886; evalue=7.69e-68; confidence=medium
Rice	`Os07g0573700` (CSTLP2) - identity=80.5; qcov=1.03; evalue=0; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0015165 (pyrimidine nucleotide-sugar transmembrane transporter activity); GO:0090481 (pyrimidine nucleotide-sugar transmembrane transport)
KEGG	-
Pfam	PF04142 (Nuc_sug_transp); PF08449 (UAA)
InterPro	-
eggNOG	-
NR	GeneID:131011040

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057794768.1`
2	Trans-golgi network	Trans-golgi network	0.40000	`XP_057794768.1`
3	Nucleus	细胞核	0.00000	`XP_057794768.1`
4	Chromosome	染色体	0.00000	`XP_057794768.1`
5	Centromere	着丝粒	0.00000	`XP_057794768.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:63464689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:63464713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,C36
`Chr2:63465590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr2:63465997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A9,B130,B15,B8
`Chr2:63466047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,C8
`Chr2:63466363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B69
`Chr2:63466364`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B52,C37,D11,D4
`Chr2:63466479`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,B103,B114,B127,B54
`Chr2:63467007`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,B58,B82,C9
`Chr2:63467414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B50,C23
`Chr2:63468013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr2:63468018`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B20,B34,C16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794768.1

353 aa

176

353

Nuc_sug_transp

UAA

PF04142 Nuc_sug_transp 51-346 aa PF08449 UAA 113-347 aa

XP_057794769.1

343 aa

172

343

Nuc_sug_transp

UAA

PF04142 Nuc_sug_transp 41-336 aa PF08449 UAA 103-337 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794768.1`	Pfam	`PF04142`	Nuc_sug_transp	Family	51	346	8e-56	190.2	Nucleotide-sugar transporter
`XP_057794768.1`	Pfam	`PF08449`	UAA	Family	113	347	1.6e-10	41.4	UAA transporter family
`XP_057794769.1`	Pfam	`PF04142`	Nuc_sug_transp	Family	41	336	7.2e-56	190.3	Nucleotide-sugar transporter
`XP_057794769.1`	Pfam	`PF08449`	UAA	Family	103	337	1.9e-10	41.1	UAA transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938785.1
GAATATCTGAAAAATAAAATAATTAAATTAGTGCAAAATTAATTAATTTATTAAAATAAAATAAATTAGCAGTATAAAATTTATAGTAATTTTATAGCACCATCATTGAAAAAAAAAAAACAAGTACAGCATAAAAATCAAATAAAAACGCTTATTCTTTCTCATCTTCAGTTCTCGTCGCGGTTCTTCTTCACCTCACTCCACTCCATTCTGTTTCTTTTTCTAGTTCTTACTCCCCAAATCTTATTCTACTGCATTTG...

XM_057938786.1
GCTTATTCTTTCTCATCTTCAGTTCTCGTCGCGGTTCTTCTTCACCTCACTCCACTCCATTCTGTTTCTTTTTCTAGTTCTTACTCCCCAAATCTTATTCTACTGCATTTGGGTGGTGGTGGTGGTAGTAGTAGTGGCGGTGGCGACGGAGGACGATTGTTGGTAGAGAGAGAGAGTGTGAATGGAGTACAGAAGAATTAAGGATCAGGATAAAGATGAGGATTCAGTTCATGATGATCTTGAGAGCTTAAGAGGGAAAT...

CDS

2 records

下载 CDS FASTA

LOC131011040
ATGGAGTACAGAAGAATTAAGGATCAGGATAAAGATGAGGATTCAGTTCATGATGATCTTGAGAGCTTAAGAGGGAAATCCCATTCAGGTGGCTCTGCGGACCATACTAAGTGGAAGCGCAAGTCTGCGGTGACACTAGCATTGACAGTTCTTACAAGTTCACAAGCAATTCTTATCGTCTGGTCAAAGAGGGCTGGCAAGTATGAGTACAGTGTTACAACTGCTAATTTTTTGGTAGAGACTTTGAAGTGTGCACTATC...

LOC131011040
ATGGAGTACAGAAGAATTAAGGATCAGGATAAAGATGAGGATTCAGTTCATGATGATCTTGAGAGCTTAAGAGGGAAATCCCATTCAGGCCCTCCTAGTAATTTGGTTGCTTTAGTAGGTGGCTCTGCGGACCATACTAAGTGGAAGCGCAAGTCTGCGGTGACACTAGCATTGACAGTTCTTACAAGTTCACAAGCAATTCTTATCGTCTGGTCAAAGAGGGCTGGCAAGTATGAGTACAGTGTTACAACTGCTAATTT...

Protein

2 records

下载 Protein FASTA

XP_057794768.1
MEYRRIKDQDKDEDSVHDDLESLRGKSHSGPPSNLVALVGGSADHTKWKRKSAVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWRNEGVTDDNRLSTTWDEVSVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKRKLNEIQWAAFALLCAGCTTAQLNSNSDKVLQTPLQGWMMAIVMALLSGFAGVYTEAIIKKRPSRNINVQNFWLYVFGMIFNVIAIVV...

XP_057794769.1
MEYRRIKDQDKDEDSVHDDLESLRGKSHSGGSADHTKWKRKSAVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWRNEGVTDDNRLSTTWDEVSVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKRKLNEIQWAAFALLCAGCTTAQLNSNSDKVLQTPLQGWMMAIVMALLSGFAGVYTEAIIKKRPSRNINVQNFWLYVFGMIFNVIAIVVQDFDAVTNKG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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