Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004142`

染色体: Chr02 坐标: 63749835-63760427 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004142`
名称	SmilChr02G004142
描述	5'-3' exoribonuclease 3
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	63749835 - 63760427 / `+`

ID 对照

NCBI Gene ID	`LOC131011067`
GeneID	`131011067`
locus_tag	`-`
NCBI Name	`LOC131011067`
原始查询	`LOC131011067`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	5'-3' exoribonuclease 3
产物	5'-3' exoribonuclease 3
Arabidopsis	`AT1G75660` (XRN3) 5'-3' exoribonuclease 3 [Source:NCBI gene (formerly Entrezgene);Acc:843900] identity=72.8; qcov=0.833; evalue=0; confidence=high
Rice	`Os01g0872700` (OsXrn3) - identity=67.2; qcov=1.03; evalue=0; confidence=high
GO	GO:0000956 (nuclear-transcribed mRNA catabolic process); GO:0003723 (RNA binding); GO:0004534 (5'-3' RNA exonuclease activity); GO:0005634 (nucleus); GO:0008270 (zinc ion binding)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)); smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF03159 (XRN_N); PF17846 (XRN_M)
InterPro	-
eggNOG	-
NR	GeneID:131011067

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057794801.1`
2	Nucleus	细胞核	0.80000	`XP_057794801.1`
3	Cytosol	细胞质基质	0.80000	`XP_057794801.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.40000	`XP_057794801.1`
5	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057794801.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:63751323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,D10
`Chr2:63754100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:63754171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr2:63756412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:63759554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C6,D8
`Chr2:63759654`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:63759672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C48
`Chr2:63759704`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr2:63759758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr2:63759840`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B1
`Chr2:63759840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:63759914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794801.1

1093 aa

546

1093

XRN_N

XRN_M

PF03159 XRN_N 1-253 aa PF17846 XRN_M 327-845 aa

XP_057794803.1

1088 aa

544

1088

XRN_N

XRN_M

PF03159 XRN_N 1-253 aa PF17846 XRN_M 327-840 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794801.1`	Pfam	`PF03159`	XRN_N	Family	1	253	6.2e-103	344.1	XRN 5'-3' exonuclease N-terminus
`XP_057794801.1`	Pfam	`PF17846`	XRN_M	Domain	327	845	5.2e-167	557.0	Xrn1 helical domain
`XP_057794803.1`	Pfam	`PF03159`	XRN_N	Family	1	253	6.1e-103	344.1	XRN 5'-3' exonuclease N-terminus
`XP_057794803.1`	Pfam	`PF17846`	XRN_M	Domain	327	840	5.6e-163	543.8	Xrn1 helical domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938818.1
TCGGGTTTTGGTCCCGGTTCTCCGGCCCAACCGATTGGAACGCATGCCCTAGTTCTGTTGCAACCACAATTTGGATTCTCTTCTGCTGCTGCTCTTCGATCTCATACTATCCTTGTCCGATTTCCAATAAAACAATTCTATTTCTCAATTTCTTTTTCTTCATTTTTTTTGTGGCTTTCTCCACTAAATATTTGTTAGATCCCAATTATTTTAATTATTGGGATTCGTTGCTCGATTGATTAACGATGGGAGTTCCGGCG...

XM_057938820.1
TCGGGTTTTGGTCCCGGTTCTCCGGCCCAACCGATTGGAACGCATGCCCTAGTTCTGTTGCAACCACAATTTGGATTCTCTTCTGCTGCTGCTCTTCGATCTCATACTATCCTTGTCCGATTTCCAATAAAACAATTCTATTTCTCAATTTCTTTTTCTTCATTTTTTTTGTGGCTTTCTCCACTAAATATTTGTTAGATCCCAATTATTTTAATTATTGGGATTCGTTGCTCGATTGATTAACGATGGGAGTTCCGGCG...

CDS

2 records

下载 CDS FASTA

LOC131011067
ATGGGAGTTCCGGCGTTCTATCGGTGGCTGGCGGAGAAGTATCCACTGGTGGTGGTGGACGTAGTTGAGGAAGAACCGGTGGATATCGAAGGCATTAAAATTCCGGTGGATACGAGCAAGCCGAACCCCAACAATATCGAATACGATAATCTGTATCTCGATATGAACGGAATCATTCATCCCTGCTTTCACCCTGAAGACCGGCCTTCTCCAACCACCTTTGATGAGGTGTTTCAGTGCATATTTGACTATATAGATAG...

Protein

2 records

下载 Protein FASTA

XP_057794801.1
MGVPAFYRWLAEKYPLVVVDVVEEEPVDIEGIKIPVDTSKPNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTTFDEVFQCIFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADSAAEEERLRQEFENEGRKLPPKQESQLFDSNVITPGTPFMAVLSIALQYYIHLRLNNDPGWKNVKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQ...

XP_057794803.1
MGVPAFYRWLAEKYPLVVVDVVEEEPVDIEGIKIPVDTSKPNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTTFDEVFQCIFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADSAAEEERLRQEFENEGRKLPPKQESQLFDSNVITPGTPFMAVLSIALQYYIHLRLNNDPGWKNVKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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