当前解析结果
SmilChr01G004310| 统一新 Gene ID | SmilChr01G004310 |
|---|---|
| 名称 | SmilChr01G004310 |
| 描述 | uncharacterized SmilChr01G004310 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61278190 - 61287644 / + |
| NCBI Gene ID | LOC131011144 |
|---|---|
| GeneID | 131011144 |
| locus_tag | - |
| NCBI Name | LOC131011144 |
| 原始查询 | LOC131011144 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:826759]; symbol=AT4G11550; hit=AT4G11550; species=arabidopsis; confidence=low |
| 产物 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:826759]; symbol=AT4G11550; hit=AT4G11550; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G11550 (AT4G11550)Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:826759] identity=32.1; qcov=0.302; evalue=2.39e-45; confidence=low |
| Rice | Os01g0587500- identity=33.3; qcov=0.054; evalue=2.7e-11; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF00011 (HSP20); PF03107 (C1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011144 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057794920.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057794920.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057794920.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057794920.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057794920.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61278430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B67,B86,B9,C44 |
Chr1:61278545 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C53 |
Chr1:61278545 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C53 |
Chr1:61278648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:61278675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C70 |
Chr1:61278803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B25,C1,D7 |
Chr1:61278830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr1:61278831 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:61278898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,C2,C32,C68 |
Chr1:61279376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C12 |
Chr1:61279903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:61279942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794920.1PF00011
HSP20 13-97 aa
PF03107
C1_2 290-337 aa
PF03107
C1_2 389-436 aa
PF03107
C1_2 446-496 aa
PF03107
C1_2 565-612 aa
PF03107
C1_2 1297-1345 aa
PF03107
C1_2 1356-1402 aa
PF03107
C1_2 1471-1521 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794920.1 |
Pfam | PF00011 |
HSP20 | Domain | 13 | 97 | 1.7e-06 | 28.8 | Hsp20/alpha crystallin family |
XP_057794920.1 |
Pfam | PF03107 |
C1_2 | Domain | 290 | 337 | 1e-91 | 301.8 | C1 domain |
XP_057794920.1 |
Pfam | PF03107 |
C1_2 | Domain | 389 | 436 | 1e-91 | 301.8 | C1 domain |
XP_057794920.1 |
Pfam | PF03107 |
C1_2 | Domain | 446 | 496 | 1e-91 | 301.8 | C1 domain |
XP_057794920.1 |
Pfam | PF03107 |
C1_2 | Domain | 565 | 612 | 1e-91 | 301.8 | C1 domain |
XP_057794920.1 |
Pfam | PF03107 |
C1_2 | Domain | 1297 | 1345 | 1e-91 | 301.8 | C1 domain |
XP_057794920.1 |
Pfam | PF03107 |
C1_2 | Domain | 1356 | 1402 | 1e-91 | 301.8 | C1 domain |
XP_057794920.1 |
Pfam | PF03107 |
C1_2 | Domain | 1471 | 1521 | 1e-91 | 301.8 | C1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。