当前解析结果
SmilChr02G001541| 统一新 Gene ID | SmilChr02G001541 |
|---|---|
| 名称 | SmilChr02G001541 |
| 描述 | elongation factor 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 28672181 - 28672621 / - |
| NCBI Gene ID | LOC131011153 |
|---|---|
| GeneID | 131011153 |
| locus_tag | - |
| NCBI Name | LOC131011153 |
| 原始查询 | LOC131011153 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | elongation factor 2-like |
| 产物 | elongation factor 2-like |
| Arabidopsis | AT1G56070 (LOS1)Ribosomal protein S5/Elongation factor G/III/V family protein [Source:NCBI gene (formerly Entrezgene);Acc:842058] identity=74.7; qcov=1; evalue=1.1e-70; confidence=high |
| Rice | Os02g0519900- identity=76; qcov=1; evalue=3.54e-77; confidence=high |
| GO | GO:0003746 (translation elongation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005829 (cytosol); GO:0006414 (translational elongation); GO:0043022 (ribosome binding); GO:1990904 (ribonucleoprotein complex) |
| KEGG | - |
| Pfam | PF03764 (EFG_IV) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011153 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057794933.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057794933.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057794933.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794933.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794933.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:28672201 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B2,C1,D3 |
Chr2:28672257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr2:28672286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr2:28672310 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,B5 |
Chr2:28672367 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:28672388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr2:28672396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B140 |
Chr2:28672417 |
A |
AGT |
2bp_insertion | frameshift_variant | 1 | B104 |
Chr2:28672417 |
A |
AGT |
2bp_insertion | CDS_variant | 1 | B104 |
Chr2:28672428 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,D11 |
Chr2:28672467 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr2:28672467 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794933.1PF03764
EFG_IV 23-128 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794933.1 |
Pfam | PF03764 |
EFG_IV | Domain | 23 | 128 | 1.5e-18 | 67.4 | Elongation factor G, domain IV |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。