当前解析结果
SmilChr02G001544| 统一新 Gene ID | SmilChr02G001544 |
|---|---|
| 名称 | SmilChr02G001544 |
| 描述 | elongation factor 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 28690398 - 28693895 / - |
| NCBI Gene ID | LOC131011155 |
|---|---|
| GeneID | 131011155 |
| locus_tag | - |
| NCBI Name | LOC131011155 |
| 原始查询 | LOC131011155 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | elongation factor 2-like |
| 产物 | elongation factor 2-like |
| Arabidopsis | AT1G56070 (LOS1)Ribosomal protein S5/Elongation factor G/III/V family protein [Source:NCBI gene (formerly Entrezgene);Acc:842058] identity=93.6; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0519900- identity=92.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0003746 (translation elongation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005829 (cytosol); GO:0006414 (translational elongation); GO:0043022 (ribosome binding); GO:1990904 (ribonucleoprotein complex) |
| KEGG | - |
| Pfam | PF00009 (GTP_EFTU); PF00679 (EFG_C); PF03144 (GTP_EFTU_D2); PF03764 (EFG_IV); PF14492 (EFG_III); PF22042 (EF-G_D2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011155 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057794934.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057794934.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057794934.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794934.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794934.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:28690551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B37,B49,C69 |
Chr2:28690581 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:28690791 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,B6,C63 |
Chr2:28690893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,D3 |
Chr2:28690905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr2:28691030 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C20 |
Chr2:28691030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr2:28691202 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B111,C30 |
Chr2:28691240 |
GA |
G |
1bp_deletion | frameshift_variant | 4 | A18,B109,C79,D2 |
Chr2:28691240 |
GA |
G |
1bp_deletion | CDS_variant | 4 | A18,B109,C79,D2 |
Chr2:28691318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,D3 |
Chr2:28691321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794934.1PF00009
GTP_EFTU 18-227 aa
PF22042
EF-G_D2 379-469 aa
PF03144
GTP_EFTU_D2 394-462 aa
PF14492
EFG_III 487-549 aa
PF03764
EFG_IV 610-721 aa
PF00679
EFG_C 724-811 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794934.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 18 | 227 | 6.5e-49 | 166.8 | Elongation factor Tu GTP binding domain |
XP_057794934.1 |
Pfam | PF22042 |
EF-G_D2 | Domain | 379 | 469 | 1.3e-06 | 29.1 | Elongation factor G domain 2 |
XP_057794934.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 394 | 462 | 2.6e-09 | 38.1 | Elongation factor Tu domain 2 |
XP_057794934.1 |
Pfam | PF14492 |
EFG_III | Domain | 487 | 549 | 6.8e-12 | 46.0 | Elongation Factor G, domain III |
XP_057794934.1 |
Pfam | PF03764 |
EFG_IV | Domain | 610 | 721 | 8.2e-30 | 103.8 | Elongation factor G, domain IV |
XP_057794934.1 |
Pfam | PF00679 |
EFG_C | Domain | 724 | 811 | 1.8e-21 | 76.7 | Elongation factor G C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。