Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002251`

染色体: Chr02 坐标: 39936272-39942429 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002251`
名称	SmilChr02G002251
描述	uncharacterized SmilChr02G002251
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	39936272 - 39942429 / `+`

ID 对照

NCBI Gene ID	`LOC131011183`
GeneID	`131011183`
locus_tag	`-`
NCBI Name	`LOC131011183`
原始查询	`LOC131011183`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	trafficking protein particle complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819408]; symbol=AT2G47960; hit=AT2G47960; species=arabidopsis; confidence=high
产物	trafficking protein particle complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819408]; symbol=AT2G47960; hit=AT2G47960; species=arabidopsis; confidence=high
Arabidopsis	`AT2G47960` (AT2G47960) trafficking protein particle complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819408] identity=65.6; qcov=0.967; evalue=0; confidence=high
Rice	`Os10g0498800` - identity=46; qcov=0.14; evalue=7.51e-12; confidence=weak
GO	GO:1990072 (TRAPPIII protein complex)
KEGG	-
Pfam	PF06159 (TRAPPC13_N); PF23643 (TRAPPC13_C); PF23647 (TRAPPC13_M)
InterPro	-
eggNOG	-
NR	GeneID:131011183

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057794965.1`
2	Golgi apparatus	高尔基体	0.60000	`XP_057794965.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057794965.1`
4	Autophagic vesicle	Autophagic vesicle	0.20000	`XP_057794965.1`
5	Autophagosome	Autophagosome	0.20000	`XP_057794965.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:39936569`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr2:39936570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr2:39936596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B32,B37,B6,C63
`Chr2:39939263`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,B139
`Chr2:39939369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,A13,B117,C27,C83
`Chr2:39939370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,A13,B117,C27,C83
`Chr2:39940081`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B80,C61
`Chr2:39940082`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B104,B139
`Chr2:39942142`	`TGA`	`T`	2bp_deletion	CDS_variant	1	A24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794965.1

451 aa

226

451

TRAPPC13_N

TRAPPC13_M

TRAPPC13_C

PF06159 TRAPPC13_N 18-205 aa PF23647 TRAPPC13_M 209-329 aa PF23643 TRAPPC13_C 348-439 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794965.1`	Pfam	`PF06159`	TRAPPC13_N	Domain	18	205	2.1e-36	126.2	Trafficking protein particle complex subunit 13, N-terminal
`XP_057794965.1`	Pfam	`PF23647`	TRAPPC13_M	Domain	209	329	1.5e-22	81.1	Trafficking protein particle complex subunit 13, middle domain
`XP_057794965.1`	Pfam	`PF23643`	TRAPPC13_C	Domain	348	439	3.5e-16	59.8	Trafficking protein particle complex subunit 13, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938982.1
GAAGCGCGCTTTCTAGTCAACAGTCTTCTCTGACCATTTCTACACTGCTTCCGACTGTCATCAATTCAAATCCCAGCAGCTCCGGCAACTCAACAAACAAAAAACCGATGAGTAGCGGCAGCGGCGGTGGCGGAGGCGGCGGAGGTCAACCGGCGACGCACTCATTGGCGTTTAGAGTGATGCGTCTCTGCCGCCCGACGCTCCACGTCGACAATTCCCCTCTCAAATTCGACCCCTGCGATCTCCTCTTCGGCGAGGAC...

CDS

1 records

下载 CDS FASTA

LOC131011183
ATGAGTAGCGGCAGCGGCGGTGGCGGAGGCGGCGGAGGTCAACCGGCGACGCACTCATTGGCGTTTAGAGTGATGCGTCTCTGCCGCCCGACGCTCCACGTCGACAATTCCCCTCTCAAATTCGACCCCTGCGATCTCCTCTTCGGCGAGGACCTCTTCGACGATCCAATCGCGGCTTCGCACCTCCCTCGCCTCCTCGGCGGCCAATCGAACGCCGCGGCCTTAGATCCGGCCGACCTCAGCTACCGCGGCAGATTCCT...

Protein

1 records

下载 Protein FASTA

XP_057794965.1
MSSGSGGGGGGGGQPATHSLAFRVMRLCRPTLHVDNSPLKFDPCDLLFGEDLFDDPIAASHLPRLLGGQSNAAALDPADLSYRGRFLLHQPTDSLGLPGLLVLPQSFGAIYLGETFCSYISINNSSNFEVRDVVIKAEIQTERQRLLLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYTDGDNERKYLPQFFKFMVSNPLSVRTKVRSVKDTTFLEACIENHTKSDLYMDQVEFEPAQYWSATVLKAANHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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