当前解析结果
SmilChr02G000704| 统一新 Gene ID | SmilChr02G000704 |
|---|---|
| 名称 | SmilChr02G000704 |
| 描述 | uncharacterized SmilChr02G000704 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 11317401 - 11320128 / - |
| NCBI Gene ID | LOC131011187 |
|---|---|
| GeneID | 131011187 |
| locus_tag | - |
| NCBI Name | LOC131011187 |
| 原始查询 | LOC131011187 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:842501]; symbol=AT1G62050; hit=AT1G62050; species=arabidopsis; confidence=high |
| 产物 | Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:842501]; symbol=AT1G62050; hit=AT1G62050; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G62050 (AT1G62050)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:842501] identity=57.1; qcov=1.09; evalue=0; confidence=high |
| Rice | Os07g0512100- identity=46.6; qcov=1.03; evalue=8.15e-142; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF11904 (ANKRD13_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011187 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057794967.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057794967.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057794967.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794967.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794967.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:11317521 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B120,C87 |
Chr2:11317564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,C37,C71 |
Chr2:11317578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C54,C74 |
Chr2:11317584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,C54,C74 |
Chr2:11317657 |
G |
GC |
1bp_insertion | frameshift_variant | 8 | B100,B13,B67,B85,C25,C31,C54,C74 |
Chr2:11317697 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B69 |
Chr2:11317697 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B69 |
Chr2:11317765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:11318670 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,C26 |
Chr2:11318679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr2:11318694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B10,B135,B32 |
Chr2:11318769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C56 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794967.1PF11904
ANKRD13_C 193-541 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794967.1 |
Pfam | PF11904 |
ANKRD13_C | Domain | 193 | 541 | 3.3e-92 | 310.2 | ANKRD13 C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。