Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000709`

染色体: Chr02 坐标: 11436973-11442426 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000709`
名称	SmilChr02G000709
描述	arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	11436973 - 11442426 / `+`

ID 对照

NCBI Gene ID	`LOC131011199`
GeneID	`131011199`
locus_tag	`-`
NCBI Name	`LOC131011199`
原始查询	`LOC131011199`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like
产物	arogenate dehydratase/prephenate dehydratase 1%2C chloroplastic-like
Arabidopsis	`AT1G11790` (ADT1) arogenate dehydratase 1 [Source:NCBI gene (formerly Entrezgene);Acc:837725] identity=70.3; qcov=0.927; evalue=1.27e-175; confidence=high
Rice	`Os03g0286200` - identity=65.6; qcov=0.854; evalue=3.75e-148; confidence=high
GO	GO:0004664 (prephenate dehydratase activity); GO:0005737 (cytoplasm); GO:0009094 (L-phenylalanine biosynthetic process); GO:0009507 (chloroplast); GO:0047769 (arogenate dehydratase activity)
KEGG	smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00800 (PDT); PF01842 (ACT)
InterPro	-
eggNOG	-
NR	GeneID:131011199

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057794976.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057794976.1`
3	Nucleus	细胞核	0.00000	`XP_057794976.1`
4	Chromosome	染色体	0.00000	`XP_057794976.1`
5	Centromere	着丝粒	0.00000	`XP_057794976.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:11437188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr2:11437221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B20,B29,B97,D2
`Chr2:11438295`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr2:11438296`	`GA`	`G`	1bp_deletion	frameshift_variant	124	A1,A13,A16,A20,A21,A23,A3,A5,B1,B102,B104,B105,B106,B107,B109,B11,B112,B114,B115,B12,B121,B123,B124,B127,B131,B133,B136,B138,B139,B17,B18,B20,B21,B22,B25,B26,B29,B30,B33,B34,B36,B37,B4,B41,B45,B46,B48,B49,B51,B52,B54,B55,B57,B59,B6,B61,B63,B65,B66,B67,B69,B7,B70,B72,B73,B75,B76,B77,B78,B80,B81,B84,B86,B87,B88,B89,B91,B93,B98,B99,C10,C12,C15,C18,C20,C22,C25,C26,C30,C31,C33,C35,C36,C37,C4,C40,C41,C43,C44,C45,C46,C48,C5,C50,C51,C55,C57,C60,C64,C66,C67,C70,C71,C75,C76,C77,C80,C84,C85,D10,D2,D4,D6,D8
`Chr2:11438345`	`CTG`	`C`	2bp_deletion	frameshift_variant	70	A20,A23,A24,A25,A5,A6,A7,A8,B108,B11,B112,B114,B119,B122,B124,B126,B136,B137,B138,B17,B20,B42,B45,B46,B50,B51,B56,B6,B62,B8,B80,B82,B85,B88,B89,B90,B92,B94,B95,C1,C12,C17,C2,C20,C21,C28,C3,C30,C31,C38,C39,C4,C44,C53,C54,C55,C58,C59,C63,C65,C7,C73,C75,C80,C81,C86,C87,C9,D5,D8
`Chr2:11438481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B14,B56,C24,C40
`Chr2:11438544`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,B67
`Chr2:11438580`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	B113,B74,C86
`Chr2:11438580`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B113,B74,C86
`Chr2:11438655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B29,B97,C40
`Chr2:11440664`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B7,C57
`Chr2:11440664`	`AT`	`A`	1bp_deletion	CDS_variant	2	B7,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794976.1

371 aa

186

371

PDT

ACT

PF00800 PDT 87-262 aa PF01842 ACT 274-315 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794976.1`	Pfam	`PF00800`	PDT	Family	87	262	8.6e-59	199.1	Prephenate dehydratase
`XP_057794976.1`	Pfam	`PF01842`	ACT	Domain	274	315	2.3e-06	28.0	ACT domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938993.1
CGATTTCAACCCCCAAACTTTGGATTTTCAGCTACACACGTCTTCGAGAATCGAGAAAGCGTCAACCCGACAATTGTATATTGAATTCAACCCACCAAACCAATTCCAGAAAATTCACTCCATTTTCTCCTTGTTTCCTTTCCTCCCTTAATCTGCAAGCATTTTGTGTGCATGATTTGCACACATTGGGACTTGAGCAGCAGAAACAGACATGGCTCTGAATGCCGCACCAGTCTTGGTGTATTACGCTAACTCGGCGG...

CDS

1 records

下载 CDS FASTA

LOC131011199
ATGGCTCTGAATGCCGCACCAGTCTTGGTGTATTACGCTAACTCGGCGGCCATCCCTGTTCTTCACGGTGGACGACCTAAGTTCTCGAATTCGAGATTTCAAAGGGAATTAGAGTGTTTGTGTCAGAGGGCAGTGGCACCAGTGGAAGATGAGAGTCCCTCAGCTCGCTATGTTGCTCAAAGGGACTTGAATTCTCTCCCAAAGCCATTGTCAGCAACATATTTTTCTTCTTCCTCTAGTGATGGTAAGAAGGTCCGTGT...

Protein

1 records

下载 Protein FASTA

XP_057794976.1
MALNAAPVLVYYANSAAIPVLHGGRPKFSNSRFQRELECLCQRAVAPVEDESPSARYVAQRDLNSLPKPLSATYFSSSSSDGKKVRVAYQGVPGAYSEAAALKAYPKCETVPCDHFEAAFKAVELWLADKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLIVNHCLLGLPGVRKEELKSVLSHPQALDQCEVFLNELGVTRVTADDPAHAAQIVVCEGVRETGAVASTRAAEIYGLDVLAEGIQDDSDNITRFLILA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器