当前解析结果
SmilChr02G000719| 统一新 Gene ID | SmilChr02G000719 |
|---|---|
| 名称 | SmilChr02G000719 |
| 描述 | probable rhamnogalacturonate lyase B |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 11542462 - 11554696 / - |
| NCBI Gene ID | LOC131011205 |
|---|---|
| GeneID | 131011205 |
| locus_tag | - |
| NCBI Name | LOC131011205 |
| 原始查询 | LOC131011205 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable rhamnogalacturonate lyase B |
| 产物 | probable rhamnogalacturonate lyase B |
| Arabidopsis | AT1G09890 (AT1G09890)Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521] identity=50.8; qcov=1; evalue=0; confidence=high |
| Rice | Os08g0554100- identity=49.5; qcov=0.994; evalue=0; confidence=high |
| GO | GO:0003824 (catalytic activity); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF06045 (Rhamnogal_lyase); PF14683 (CBM-like); PF14686 (fn3_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011205 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057794981.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057794981.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057794981.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794981.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794981.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:11542734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr2:11542810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr2:11547295 |
C |
CAA |
2bp_insertion | frameshift_variant | 18 | A21,A25,B113,B118,B28,B4,B44,B5,B62,B9,C11,C18,C44,C67,C69,C73,C80,C83 |
Chr2:11547296 |
TTG |
T |
2bp_deletion | frameshift_variant | 18 | A21,A25,B113,B118,B28,B4,B44,B5,B62,B9,C11,C18,C44,C67,C69,C73,C80,C83 |
Chr2:11549507 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C76 |
Chr2:11550648 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | A22,B103,B37,B6,C33,C53,C63,C64,C66,D3 |
Chr2:11550724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B138,B61,B73 |
Chr2:11551675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B120,B83,C27,C76 |
Chr2:11551987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,C59 |
Chr2:11553052 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B120,B83,C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794981.1PF06045
Rhamnogal_lyase 5-200 aa
PF14686
fn3_3 355-426 aa
PF14683
CBM-like 440-627 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794981.1 |
Pfam | PF06045 |
Rhamnogal_lyase | Family | 5 | 200 | 4.3e-71 | 239.4 | Rhamnogalacturonate lyase family |
XP_057794981.1 |
Pfam | PF14686 |
fn3_3 | Domain | 355 | 426 | 5.6e-20 | 71.6 | Polysaccharide lyase family 4, domain II |
XP_057794981.1 |
Pfam | PF14683 |
CBM-like | Domain | 440 | 627 | 1.5e-39 | 136.1 | Polysaccharide lyase family 4, domain III |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。