当前解析结果
SmilChr02G000736| 统一新 Gene ID | SmilChr02G000736 |
|---|---|
| 名称 | SmilChr02G000736 |
| 描述 | aspartic proteinase A1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 11921131 - 11925093 / - |
| NCBI Gene ID | LOC131011219 |
|---|---|
| GeneID | 131011219 |
| locus_tag | - |
| NCBI Name | LOC131011219 |
| 原始查询 | LOC131011219 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartic proteinase A1-like |
| 产物 | aspartic proteinase A1-like |
| Arabidopsis | AT1G11910 (APA1)aspartic proteinase A1 [Source:NCBI gene (formerly Entrezgene);Acc:837740] identity=66.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0567100 (Oryzasin)- identity=66.6; qcov=0.974; evalue=0; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis); GO:0006629 (lipid metabolic process) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF03489 (SapB_2); PF05184 (SapB_1); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011219 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057794991.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057794991.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057794991.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794991.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794991.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:11921337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B130,B23,B7,C17,C59 |
Chr2:11921574 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C37 |
Chr2:11921603 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B104 |
Chr2:11921604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B7,C17,C59 |
Chr2:11922036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B71,B88,B98,C62 |
Chr2:11922053 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B104 |
Chr2:11922077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B130,B23,B7,C17,C59 |
Chr2:11922140 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,B37,B54 |
Chr2:11922283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr2:11922426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C76 |
Chr2:11922646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,B41,B61 |
Chr2:11922996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794991.1PF00026
Asp 80-500 aa
PF14543
TAXi_N 81-239 aa
PF03489
SapB_2 314-347 aa
PF05184
SapB_1 374-410 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794991.1 |
Pfam | PF00026 |
Asp | Domain | 80 | 500 | 2.5e-116 | 389.3 | Eukaryotic aspartyl protease |
XP_057794991.1 |
Pfam | PF14543 |
TAXi_N | Domain | 81 | 239 | 1.9e-14 | 55.0 | Xylanase inhibitor N-terminal |
XP_057794991.1 |
Pfam | PF03489 |
SapB_2 | Family | 314 | 347 | 5.9e-11 | 43.0 | Saposin-like type B, region 2 |
XP_057794991.1 |
Pfam | PF05184 |
SapB_1 | Domain | 374 | 410 | 2.9e-13 | 50.2 | Saposin-like type B, region 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。