Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000756`

染色体: Chr02 坐标: 12333233-12337547 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000756`
名称	SmilChr02G000756
描述	short-chain dehydrogenase/reductase SDRA-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	12333233 - 12337547 / `-`

ID 对照

NCBI Gene ID	`LOC131011235`
GeneID	`131011235`
locus_tag	`-`
NCBI Name	`LOC131011235`
原始查询	`LOC131011235`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	short-chain dehydrogenase/reductase SDRA-like
产物	short-chain dehydrogenase/reductase SDRA-like
Arabidopsis	`AT4G05530` (IBR1) indole-3-butyric acid response 1 [Source:NCBI gene (formerly Entrezgene);Acc:825905] identity=73.4; qcov=1; evalue=2.49e-137; confidence=high
Rice	`Os09g0133200` - identity=65.6; qcov=1; evalue=1.46e-106; confidence=high
GO	GO:0016491 (oxidoreductase activity)
KEGG	smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00106 (adh_short); PF08659 (KR); PF13561 (adh_short_C2); PF23441 (SDR)
InterPro	-
eggNOG	-
NR	GeneID:131011235

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057795005.1`
2	Peroxisome	过氧化物酶体	0.80000	`XP_057795005.1`
3	Nucleus	细胞核	0.00000	`XP_057795005.1`
4	Chromosome	染色体	0.00000	`XP_057795005.1`
5	Centromere	着丝粒	0.00000	`XP_057795005.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:12334165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:12334842`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A21,B121,B76,C45,C80
`Chr2:12334842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B121,B76,C45,C80
`Chr2:12334877`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B84
`Chr2:12334877`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:12336953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795005.1

253 aa

126

253

adh_short

SDR

adh_short_C2

PF00106 adh_short 11-198 aa PF23441 SDR 12-248 aa PF08659 KR 14-177 aa PF13561 adh_short_C2 17-249 aa

XP_057795006.1

253 aa

126

253

adh_short

SDR

adh_short_C2

PF00106 adh_short 11-198 aa PF23441 SDR 12-248 aa PF08659 KR 14-177 aa PF13561 adh_short_C2 17-249 aa

XP_057795007.1

253 aa

126

253

adh_short

SDR

adh_short_C2

PF00106 adh_short 11-198 aa PF23441 SDR 12-248 aa PF08659 KR 14-177 aa PF13561 adh_short_C2 17-249 aa

XP_057795008.1

252 aa

126

252

adh_short

SDR

adh_short_C2

PF00106 adh_short 11-198 aa PF23441 SDR 12-242 aa PF08659 KR 14-177 aa PF13561 adh_short_C2 17-248 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795005.1`	Pfam	`PF00106`	adh_short	Domain	11	198	2e-42	145.6	short chain dehydrogenase
`XP_057795005.1`	Pfam	`PF23441`	SDR	Domain	12	248	7.6e-20	72.1	SDR-like rossmann domain
`XP_057795005.1`	Pfam	`PF08659`	KR	Family	14	177	2.9e-10	41.1	KR domain
`XP_057795005.1`	Pfam	`PF13561`	adh_short_C2	Domain	17	249	9.3e-58	196.3	Enoyl-(Acyl carrier protein) reductase
`XP_057795006.1`	Pfam	`PF00106`	adh_short	Domain	11	198	2e-42	145.6	short chain dehydrogenase
`XP_057795006.1`	Pfam	`PF23441`	SDR	Domain	12	248	7.6e-20	72.1	SDR-like rossmann domain
`XP_057795006.1`	Pfam	`PF08659`	KR	Family	14	177	2.9e-10	41.1	KR domain
`XP_057795006.1`	Pfam	`PF13561`	adh_short_C2	Domain	17	249	9.3e-58	196.3	Enoyl-(Acyl carrier protein) reductase
`XP_057795007.1`	Pfam	`PF00106`	adh_short	Domain	11	198	2e-42	145.6	short chain dehydrogenase
`XP_057795007.1`	Pfam	`PF23441`	SDR	Domain	12	248	7.6e-20	72.1	SDR-like rossmann domain
`XP_057795007.1`	Pfam	`PF08659`	KR	Family	14	177	2.9e-10	41.1	KR domain
`XP_057795007.1`	Pfam	`PF13561`	adh_short_C2	Domain	17	249	9.3e-58	196.3	Enoyl-(Acyl carrier protein) reductase
`XP_057795008.1`	Pfam	`PF00106`	adh_short	Domain	11	198	2e-42	145.6	short chain dehydrogenase
`XP_057795008.1`	Pfam	`PF23441`	SDR	Domain	12	242	7.2e-19	68.9	SDR-like rossmann domain
`XP_057795008.1`	Pfam	`PF08659`	KR	Family	14	177	3e-10	41.0	KR domain
`XP_057795008.1`	Pfam	`PF13561`	adh_short_C2	Domain	17	248	5.7e-57	193.7	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057939024.1
TTCTCGGTTCTTACACCAGAAATGTCACAGTTTCTTGGCTCCATCTCATCCTAAATTTTCGTTTTCTTGAATTGAAGTTAATCAGAGCGTTGACTCAGTTGATACATACATAATTTTTAGGAATGGAGAAAATCGGGAAAAGATTCCAAGAAAAAGTGGCCATAGTGACGGCTTCCACACAGGGGATCGGCTTCGGCATAGCTGAGCGGCTCGGCTTAGAAGGTGCCGCCGTCGTCATCTCCTCTCGCCGCCAAACAAAT...

XM_057939023.1
GGCTATAATTAGATATTTGGGTGCTAATGGCTATGTACCCTTAGGACACCCACCCATTATGGTGGGTAGTTTAGAGGTAGTAATTAACTACCACCATAGTGGGCTGCATGAAAATGGGGTAGCAAGTTTGAGGAATGGAGAAAATCGGGAAAAGATTCCAAGAAAAAGTGGCCATAGTGACGGCTTCCACACAGGGGATCGGCTTCGGCATAGCTGAGCGGCTCGGCTTAGAAGGTGCCGCCGTCGTCATCTCCTCTCGC...

CDS

4 records

下载 CDS FASTA

LOC131011235
ATGGAGAAAATCGGGAAAAGATTCCAAGAAAAAGTGGCCATAGTGACGGCTTCCACACAGGGGATCGGCTTCGGCATAGCTGAGCGGCTCGGCTTAGAAGGTGCCGCCGTCGTCATCTCCTCTCGCCGCCAAACAAATGTTGATGAAGCAGTGAAAAAGCTTAAAAATCAAGGAATTGAAGTGATGGGTTTGGTGTGCCACGTTTCAAATGCACAGCAGAGGAAAGATCTGATCAAGAACACAATCCAGAAATATGGAAA...

Protein

4 records

下载 Protein FASTA

XP_057795005.1
MEKIGKRFQEKVAIVTASTQGIGFGIAERLGLEGAAVVISSRRQTNVDEAVKKLKNQGIEVMGLVCHVSNAQQRKDLIKNTIQKYGKLDVVVCNAAANPSVDGIVETKEAVLDKLWEINVKASILLLQEAAPHLNKGSSIVFVSSIVGFHPLKGLAMYGVTKTALLGLTKALATEMAPDTRVNCIAPGFVPTYFASILTTDEQVRRSLEEKTLLNRVGTTQDMAAAAAYLASDDASYVTGETLIVAGGMPSRL

XP_057795006.1
MEKIGKRFQEKVAIVTASTQGIGFGIAERLGLEGAAVVISSRRQTNVDEAVKKLKNQGIEVMGLVCHVSNAQQRKDLIKNTIQKYGKLDVVVCNAAANPSVDGIVETKEAVLDKLWEINVKASILLLQEAAPHLNKGSSIVFVSSIVGFHPLKGLAMYGVTKTALLGLTKALATEMAPDTRVNCIAPGFVPTYFASILTTDEQVRRSLEEKTLLNRVGTTQDMAAAAAYLASDDASYVTGETLIVAGGMPSRL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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